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GADL1 (glutamate decarboxylase like 1)

Identity

Alias_namesglutamate decarboxylase-like 1
Other aliasADC
CSADC
HuADC
HuCSADC
HGNC (Hugo) GADL1
LocusID (NCBI) 339896
Atlas_Id 63659
Location 3p24.1  [Link to chromosome band 3p24]
Location_base_pair Starts at 30726200 and ends at 30894661 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DYNC1LI1 (3p22.3) / GADL1 (3p24.1)GADL1 (3p24.1) / PHIP (6q14.1)SSBP3 (1p32.3) / GADL1 (3p24.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GADL1   27949
Cards
Entrez_Gene (NCBI)GADL1  339896  glutamate decarboxylase like 1
AliasesADC; CSADC; HuADC; HuCSADC
GeneCards (Weizmann)GADL1
Ensembl hg19 (Hinxton)ENSG00000144644 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000144644 [Gene_View]  chr3:30726200-30894661 [Contig_View]  GADL1 [Vega]
ICGC DataPortalENSG00000144644
TCGA cBioPortalGADL1
AceView (NCBI)GADL1
Genatlas (Paris)GADL1
WikiGenes339896
SOURCE (Princeton)GADL1
Genetics Home Reference (NIH)GADL1
Genomic and cartography
GoldenPath hg38 (UCSC)GADL1  -     chr3:30726200-30894661 -  3p24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GADL1  -     3p24.1   [Description]    (hg19-Feb_2009)
EnsemblGADL1 - 3p24.1 [CytoView hg19]  GADL1 - 3p24.1 [CytoView hg38]
Mapping of homologs : NCBIGADL1 [Mapview hg19]  GADL1 [Mapview hg38]
OMIM615601   
Gene and transcription
Genbank (Entrez)AK128643 AL832766 BC093701 BC111986
RefSeq transcript (Entrez)NM_207359
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GADL1
Cluster EST : UnigeneHs.657052 [ NCBI ]
CGAP (NCI)Hs.657052
Alternative Splicing GalleryENSG00000144644
Gene ExpressionGADL1 [ NCBI-GEO ]   GADL1 [ EBI - ARRAY_EXPRESS ]   GADL1 [ SEEK ]   GADL1 [ MEM ]
Gene Expression Viewer (FireBrowse)GADL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)339896
GTEX Portal (Tissue expression)GADL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZQY3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZQY3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZQY3
Splice isoforms : SwissVarQ6ZQY3
Catalytic activity : Enzyme4.1.1.11 [ Enzyme-Expasy ]   4.1.1.114.1.1.11 [ IntEnz-EBI ]   4.1.1.11 [ BRENDA ]   4.1.1.11 [ KEGG ]   
PhosPhoSitePlusQ6ZQY3
Domaine pattern : Prosite (Expaxy)DDC_GAD_HDC_YDC (PS00392)   
Domains : Interpro (EBI)PyrdxlP-dep_de-COase    PyrdxlP-dep_Trfase    PyrdxlP-dep_Trfase_major_sub1    PyrdxlP-dep_Trfase_major_sub2    Pyridoxal-P_BS   
Domain families : Pfam (Sanger)Pyridoxal_deC (PF00282)   
Domain families : Pfam (NCBI)pfam00282   
Conserved Domain (NCBI)GADL1
DMDM Disease mutations339896
Blocks (Seattle)GADL1
SuperfamilyQ6ZQY3
Human Protein AtlasENSG00000144644
Peptide AtlasQ6ZQY3
HPRD13557
IPIIPI00792598   IPI00916685   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZQY3
IntAct (EBI)Q6ZQY3
FunCoupENSG00000144644
BioGRIDGADL1
STRING (EMBL)GADL1
ZODIACGADL1
Ontologies - Pathways
QuickGOQ6ZQY3
Ontology : AmiGOaspartate 1-decarboxylase activity  sulfinoalanine decarboxylase activity  cytosol  cellular amino acid biosynthetic process  carboxy-lyase activity  pyridoxal phosphate binding  
Ontology : EGO-EBIaspartate 1-decarboxylase activity  sulfinoalanine decarboxylase activity  cytosol  cellular amino acid biosynthetic process  carboxy-lyase activity  pyridoxal phosphate binding  
NDEx NetworkGADL1
Atlas of Cancer Signalling NetworkGADL1
Wikipedia pathwaysGADL1
Orthology - Evolution
OrthoDB339896
GeneTree (enSembl)ENSG00000144644
Phylogenetic Trees/Animal Genes : TreeFamGADL1
HOVERGENQ6ZQY3
HOGENOMQ6ZQY3
Homologs : HomoloGeneGADL1
Homology/Alignments : Family Browser (UCSC)GADL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGADL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GADL1
dbVarGADL1
ClinVarGADL1
1000_GenomesGADL1 
Exome Variant ServerGADL1
ExAC (Exome Aggregation Consortium)GADL1 (select the gene name)
Genetic variants : HAPMAP339896
Genomic Variants (DGV)GADL1 [DGVbeta]
DECIPHERGADL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGADL1 
Mutations
ICGC Data PortalGADL1 
TCGA Data PortalGADL1 
Broad Tumor PortalGADL1
OASIS PortalGADL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGADL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGADL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GADL1
DgiDB (Drug Gene Interaction Database)GADL1
DoCM (Curated mutations)GADL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GADL1 (select a term)
intoGenGADL1
Cancer3DGADL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615601   
Orphanet
MedgenGADL1
Genetic Testing Registry GADL1
NextProtQ6ZQY3 [Medical]
TSGene339896
GENETestsGADL1
Target ValidationGADL1
Huge Navigator GADL1 [HugePedia]
snp3D : Map Gene to Disease339896
BioCentury BCIQGADL1
ClinGenGADL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD339896
Chemical/Pharm GKB GenePA134944477
Clinical trialGADL1
Miscellaneous
canSAR (ICR)GADL1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGADL1
EVEXGADL1
GoPubMedGADL1
iHOPGADL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:09:05 CEST 2017

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