Atlas of Genetics and Cytogenetics in Oncology and Haematology


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GAGE1 (G antigen 1)

Identity

Alias_namesmember 1
Alias_symbol (synonym)CT4.1
Other aliasGAGE-1
HGNC (Hugo) GAGE1
LocusID (NCBI) 2543
Atlas_Id 40669
Location Xp11.23  [Link to chromosome band Xp11]
Location_base_pair Starts at 49363616 and ends at 49373139 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Liver tumors: an overview


External links

Nomenclature
HGNC (Hugo)GAGE1   4098
Cards
Entrez_Gene (NCBI)GAGE1  2543  G antigen 1
AliasesCT4.1; GAGE-1
GeneCards (Weizmann)GAGE1
Ensembl hg19 (Hinxton)ENSG00000205777 [Gene_View]  chrX:49363616-49373139 [Contig_View]  GAGE1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000205777 [Gene_View]  chrX:49363616-49373139 [Contig_View]  GAGE1 [Vega]
ICGC DataPortalENSG00000205777
TCGA cBioPortalGAGE1
AceView (NCBI)GAGE1
Genatlas (Paris)GAGE1
WikiGenes2543
SOURCE (Princeton)GAGE1
Genetics Home Reference (NIH)GAGE1
Genomic and cartography
GoldenPath hg19 (UCSC)GAGE1  -     chrX:49363616-49373139 +  Xp11.23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GAGE1  -     Xp11.23   [Description]    (hg38-Dec_2013)
EnsemblGAGE1 - Xp11.23 [CytoView hg19]  GAGE1 - Xp11.23 [CytoView hg38]
Mapping of homologs : NCBIGAGE1 [Mapview hg19]  GAGE1 [Mapview hg38]
OMIM300594   
Gene and transcription
Genbank (Entrez)BC005363 BC036094 BC069470 DB448801 DC401704
RefSeq transcript (Entrez)NM_001040663 NM_001468
RefSeq genomic (Entrez)NC_000023 NC_018934 NT_079573 NW_004929440
Consensus coding sequences : CCDS (NCBI)GAGE1
Cluster EST : UnigeneHs.278606 [ NCBI ]
CGAP (NCI)Hs.278606
Alternative Splicing GalleryENSG00000205777
Gene ExpressionGAGE1 [ NCBI-GEO ]   GAGE1 [ EBI - ARRAY_EXPRESS ]   GAGE1 [ SEEK ]   GAGE1 [ MEM ]
Gene Expression Viewer (FireBrowse)GAGE1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2543
GTEX Portal (Tissue expression)GAGE1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13065   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13065  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13065
Splice isoforms : SwissVarQ13065
PhosPhoSitePlusQ13065
Domains : Interpro (EBI)GAGE    GAGE_fam   
Domain families : Pfam (Sanger)GAGE (PF05831)   
Domain families : Pfam (NCBI)pfam05831   
Conserved Domain (NCBI)GAGE1
DMDM Disease mutations2543
Blocks (Seattle)GAGE1
SuperfamilyQ13065
Human Protein AtlasENSG00000205777
Peptide AtlasQ13065
HPRD05028
Protein Interaction databases
DIP (DOE-UCLA)Q13065
IntAct (EBI)Q13065
FunCoupENSG00000205777
BioGRIDGAGE1
STRING (EMBL)GAGE1
ZODIACGAGE1
Ontologies - Pathways
QuickGOQ13065
Ontology : AmiGOprotein binding  cellular defense response  
Ontology : EGO-EBIprotein binding  cellular defense response  
NDEx NetworkGAGE1
Atlas of Cancer Signalling NetworkGAGE1
Wikipedia pathwaysGAGE1
Orthology - Evolution
OrthoDB2543
GeneTree (enSembl)ENSG00000205777
Phylogenetic Trees/Animal Genes : TreeFamGAGE1
HOVERGENQ13065
HOGENOMQ13065
Homologs : HomoloGeneGAGE1
Homology/Alignments : Family Browser (UCSC)GAGE1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGAGE1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GAGE1
dbVarGAGE1
ClinVarGAGE1
1000_GenomesGAGE1 
Exome Variant ServerGAGE1
ExAC (Exome Aggregation Consortium)GAGE1 (select the gene name)
Genetic variants : HAPMAP2543
Genomic Variants (DGV)GAGE1 [DGVbeta]
DECIPHER (Syndromes)X:49363616-49373139  ENSG00000205777
CONAN: Copy Number AnalysisGAGE1 
Mutations
ICGC Data PortalGAGE1 
TCGA Data PortalGAGE1 
Broad Tumor PortalGAGE1
OASIS PortalGAGE1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGAGE1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGAGE1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GAGE1
DgiDB (Drug Gene Interaction Database)GAGE1
DoCM (Curated mutations)GAGE1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GAGE1 (select a term)
intoGenGAGE1
Cancer3DGAGE1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300594   
Orphanet
MedgenGAGE1
Genetic Testing Registry GAGE1
NextProtQ13065 [Medical]
TSGene2543
GENETestsGAGE1
Huge Navigator GAGE1 [HugePedia]
snp3D : Map Gene to Disease2543
BioCentury BCIQGAGE1
ClinGenGAGE1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2543
Chemical/Pharm GKB GenePA28513
Clinical trialGAGE1
Miscellaneous
canSAR (ICR)GAGE1 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGAGE1
EVEXGAGE1
GoPubMedGAGE1
iHOPGAGE1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 15:01:58 CEST 2017

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