Atlas of Genetics and Cytogenetics in Oncology and Haematology


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GAGE10 (G antigen 10)

Identity

Alias_symbol (synonym)OTTHUMG00000024136
Other aliasGAGE-10
HGNC (Hugo) GAGE10
LocusID (NCBI) 102724473
Atlas_Id 63662
Location Xp11.23  [Link to chromosome band Xp11]
Location_base_pair Starts at 49303646 and ends at 49319844 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GAGE10 (Xp11.23) / SIAE (11q24.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GAGE10   30968
Cards
Entrez_Gene (NCBI)GAGE10  102724473  G antigen 10
AliasesGAGE-10
GeneCards (Weizmann)GAGE10
Ensembl hg19 (Hinxton)ENSG00000215274 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000215274 [Gene_View]  chrX:49303646-49319844 [Contig_View]  GAGE10 [Vega]
ICGC DataPortalENSG00000215274
TCGA cBioPortalGAGE10
AceView (NCBI)GAGE10
Genatlas (Paris)GAGE10
WikiGenes102724473
SOURCE (Princeton)GAGE10
Genetics Home Reference (NIH)GAGE10
Genomic and cartography
GoldenPath hg38 (UCSC)GAGE10  -     chrX:49303646-49319844 +  Xp11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GAGE10  -     Xp11.23   [Description]    (hg19-Feb_2009)
EnsemblGAGE10 - Xp11.23 [CytoView hg19]  GAGE10 - Xp11.23 [CytoView hg38]
Mapping of homologs : NCBIGAGE10 [Mapview hg19]  GAGE10 [Mapview hg38]
OMIM300737   
Gene and transcription
Genbank (Entrez)BC160111
RefSeq transcript (Entrez)NM_001098413
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GAGE10
Alternative Splicing GalleryENSG00000215274
Gene ExpressionGAGE10 [ NCBI-GEO ]   GAGE10 [ EBI - ARRAY_EXPRESS ]   GAGE10 [ SEEK ]   GAGE10 [ MEM ]
Gene Expression Viewer (FireBrowse)GAGE10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)102724473
GTEX Portal (Tissue expression)GAGE10
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NGK3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NGK3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NGK3
Splice isoforms : SwissVarA6NGK3
PhosPhoSitePlusA6NGK3
Domains : Interpro (EBI)GAGE    GAGE_fam   
Domain families : Pfam (Sanger)GAGE (PF05831)   
Domain families : Pfam (NCBI)pfam05831   
Domain families : Smart (EMBL)GAGE (SM01379)  
Conserved Domain (NCBI)GAGE10
DMDM Disease mutations102724473
Blocks (Seattle)GAGE10
SuperfamilyA6NGK3
Human Protein AtlasENSG00000215274
Peptide AtlasA6NGK3
Protein Interaction databases
DIP (DOE-UCLA)A6NGK3
IntAct (EBI)A6NGK3
FunCoupENSG00000215274
BioGRIDGAGE10
STRING (EMBL)GAGE10
ZODIACGAGE10
Ontologies - Pathways
QuickGOA6NGK3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkGAGE10
Atlas of Cancer Signalling NetworkGAGE10
Wikipedia pathwaysGAGE10
Orthology - Evolution
OrthoDB102724473
GeneTree (enSembl)ENSG00000215274
Phylogenetic Trees/Animal Genes : TreeFamGAGE10
HOVERGENA6NGK3
HOGENOMA6NGK3
Homologs : HomoloGeneGAGE10
Homology/Alignments : Family Browser (UCSC)GAGE10
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGAGE10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GAGE10
dbVarGAGE10
ClinVarGAGE10
1000_GenomesGAGE10 
Exome Variant ServerGAGE10
ExAC (Exome Aggregation Consortium)GAGE10 (select the gene name)
Genetic variants : HAPMAP102724473
Genomic Variants (DGV)GAGE10 [DGVbeta]
DECIPHERGAGE10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGAGE10 
Mutations
ICGC Data PortalGAGE10 
TCGA Data PortalGAGE10 
Broad Tumor PortalGAGE10
OASIS PortalGAGE10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGAGE10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGAGE10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GAGE10
DgiDB (Drug Gene Interaction Database)GAGE10
DoCM (Curated mutations)GAGE10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GAGE10 (select a term)
intoGenGAGE10
Cancer3DGAGE10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300737   
Orphanet
MedgenGAGE10
Genetic Testing Registry GAGE10
NextProtA6NGK3 [Medical]
TSGene102724473
GENETestsGAGE10
Target ValidationGAGE10
Huge Navigator GAGE10 [HugePedia]
snp3D : Map Gene to Disease102724473
BioCentury BCIQGAGE10
ClinGenGAGE10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102724473
Clinical trialGAGE10
Miscellaneous
canSAR (ICR)GAGE10 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGAGE10
EVEXGAGE10
GoPubMedGAGE10
iHOPGAGE10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:50:10 CEST 2017

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