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GAGE12B (G antigen 12B)

Identity

Alias_symbol (synonym)OTTHUMG00000024142
Other aliasGAGE-12B
HGNC (Hugo) GAGE12B
LocusID (NCBI) 729428
Atlas_Id 63663
Location Xp11.23  [Link to chromosome band Xp11]
Location_base_pair Starts at 49532212 and ends at 49539477 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GAGE12B   26779
Cards
Entrez_Gene (NCBI)GAGE12B  729428  G antigen 12B
AliasesGAGE-12B
GeneCards (Weizmann)GAGE12B
Ensembl hg19 (Hinxton)ENSG00000236737 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000236737 [Gene_View]  chrX:49532212-49539477 [Contig_View]  GAGE12B [Vega]
ICGC DataPortalENSG00000236737
TCGA cBioPortalGAGE12B
AceView (NCBI)GAGE12B
Genatlas (Paris)GAGE12B
WikiGenes729428
SOURCE (Princeton)GAGE12B
Genetics Home Reference (NIH)GAGE12B
Genomic and cartography
GoldenPath hg38 (UCSC)GAGE12B  -     chrX:49532212-49539477 +  Xp11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GAGE12B  -     Xp11.23   [Description]    (hg19-Feb_2009)
EnsemblGAGE12B - Xp11.23 [CytoView hg19]  GAGE12B - Xp11.23 [CytoView hg38]
Mapping of homologs : NCBIGAGE12B [Mapview hg19]  GAGE12B [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC130374 BC143615 BC143619
RefSeq transcript (Entrez)NM_001127345
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GAGE12B
Cluster EST : UnigeneHs.632812 [ NCBI ]
CGAP (NCI)Hs.632812
Alternative Splicing GalleryENSG00000236737
Gene ExpressionGAGE12B [ NCBI-GEO ]   GAGE12B [ EBI - ARRAY_EXPRESS ]   GAGE12B [ SEEK ]   GAGE12B [ MEM ]
Gene Expression Viewer (FireBrowse)GAGE12B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)729428
GTEX Portal (Tissue expression)GAGE12B
Protein : pattern, domain, 3D structure
UniProt/SwissProtA1L429   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA1L429  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA1L429
Splice isoforms : SwissVarA1L429
PhosPhoSitePlusA1L429
Domains : Interpro (EBI)GAGE    GAGE_fam   
Domain families : Pfam (Sanger)GAGE (PF05831)   
Domain families : Pfam (NCBI)pfam05831   
Domain families : Smart (EMBL)GAGE (SM01379)  
Conserved Domain (NCBI)GAGE12B
DMDM Disease mutations729428
Blocks (Seattle)GAGE12B
SuperfamilyA1L429
Human Protein AtlasENSG00000236737
Peptide AtlasA1L429
Protein Interaction databases
DIP (DOE-UCLA)A1L429
IntAct (EBI)A1L429
FunCoupENSG00000236737
BioGRIDGAGE12B
STRING (EMBL)GAGE12B
ZODIACGAGE12B
Ontologies - Pathways
QuickGOA1L429
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkGAGE12B
Atlas of Cancer Signalling NetworkGAGE12B
Wikipedia pathwaysGAGE12B
Orthology - Evolution
OrthoDB729428
GeneTree (enSembl)ENSG00000236737
Phylogenetic Trees/Animal Genes : TreeFamGAGE12B
HOVERGENA1L429
HOGENOMA1L429
Homologs : HomoloGeneGAGE12B
Homology/Alignments : Family Browser (UCSC)GAGE12B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGAGE12B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GAGE12B
dbVarGAGE12B
ClinVarGAGE12B
1000_GenomesGAGE12B 
Exome Variant ServerGAGE12B
ExAC (Exome Aggregation Consortium)GAGE12B (select the gene name)
Genetic variants : HAPMAP729428
Genomic Variants (DGV)GAGE12B [DGVbeta]
DECIPHERGAGE12B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGAGE12B 
Mutations
ICGC Data PortalGAGE12B 
TCGA Data PortalGAGE12B 
Broad Tumor PortalGAGE12B
OASIS PortalGAGE12B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDGAGE12B
BioMutasearch GAGE12B
DgiDB (Drug Gene Interaction Database)GAGE12B
DoCM (Curated mutations)GAGE12B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GAGE12B (select a term)
intoGenGAGE12B
Cancer3DGAGE12B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGAGE12B
Genetic Testing Registry GAGE12B
NextProtA1L429 [Medical]
TSGene729428
GENETestsGAGE12B
Target ValidationGAGE12B
Huge Navigator GAGE12B [HugePedia]
snp3D : Map Gene to Disease729428
BioCentury BCIQGAGE12B
ClinGenGAGE12B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD729428
Chemical/Pharm GKB GenePA145148770
Clinical trialGAGE12B
Miscellaneous
canSAR (ICR)GAGE12B (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGAGE12B
EVEXGAGE12B
GoPubMedGAGE12B
iHOPGAGE12B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:09:06 CEST 2017

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