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GAGE12C (G antigen 12C)

Identity

Alias_symbol (synonym)OTTHUMG00000024144
Other aliasGAGE-12B
HGNC (Hugo) GAGE12C
LocusID (NCBI) 729422
Atlas_Id 63664
Location Xp11.23  [Link to chromosome band Xp11]
Location_base_pair Starts at 49532177 and ends at 49539541 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GAGE12C   28402
Cards
Entrez_Gene (NCBI)GAGE12C  729422  G antigen 12C
AliasesGAGE-12B
GeneCards (Weizmann)GAGE12C
Ensembl hg19 (Hinxton)ENSG00000237671 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000237671 [Gene_View]  chrX:49532177-49539541 [Contig_View]  GAGE12C [Vega]
ICGC DataPortalENSG00000237671
TCGA cBioPortalGAGE12C
AceView (NCBI)GAGE12C
Genatlas (Paris)GAGE12C
WikiGenes729422
SOURCE (Princeton)GAGE12C
Genetics Home Reference (NIH)GAGE12C
Genomic and cartography
GoldenPath hg38 (UCSC)GAGE12C  -     chrX:49532177-49539541 +  Xp11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GAGE12C  -     Xp11.23   [Description]    (hg19-Feb_2009)
EnsemblGAGE12C - Xp11.23 [CytoView hg19]  GAGE12C - Xp11.23 [CytoView hg38]
Mapping of homologs : NCBIGAGE12C [Mapview hg19]  GAGE12C [Mapview hg38]
OMIM300727   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001098408
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GAGE12C
Cluster EST : UnigeneHs.632812 [ NCBI ]
CGAP (NCI)Hs.632812
Alternative Splicing GalleryENSG00000237671
Gene ExpressionGAGE12C [ NCBI-GEO ]   GAGE12C [ EBI - ARRAY_EXPRESS ]   GAGE12C [ SEEK ]   GAGE12C [ MEM ]
Gene Expression Viewer (FireBrowse)GAGE12C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)729422
GTEX Portal (Tissue expression)GAGE12C
Human Protein AtlasENSG00000237671-GAGE12C [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA1L429   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA1L429  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA1L429
Splice isoforms : SwissVarA1L429
PhosPhoSitePlusA1L429
Domains : Interpro (EBI)GAGE    GAGE_fam   
Domain families : Pfam (Sanger)GAGE (PF05831)   
Domain families : Pfam (NCBI)pfam05831   
Domain families : Smart (EMBL)GAGE (SM01379)  
Conserved Domain (NCBI)GAGE12C
DMDM Disease mutations729422
Blocks (Seattle)GAGE12C
SuperfamilyA1L429
Human Protein Atlas [tissue]ENSG00000237671-GAGE12C [tissue]
Peptide AtlasA1L429
Protein Interaction databases
DIP (DOE-UCLA)A1L429
IntAct (EBI)A1L429
FunCoupENSG00000237671
BioGRIDGAGE12C
STRING (EMBL)GAGE12C
ZODIACGAGE12C
Ontologies - Pathways
QuickGOA1L429
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkGAGE12C
Atlas of Cancer Signalling NetworkGAGE12C
Wikipedia pathwaysGAGE12C
Orthology - Evolution
OrthoDB729422
GeneTree (enSembl)ENSG00000237671
Phylogenetic Trees/Animal Genes : TreeFamGAGE12C
HOVERGENA1L429
HOGENOMA1L429
Homologs : HomoloGeneGAGE12C
Homology/Alignments : Family Browser (UCSC)GAGE12C
Gene fusions - Rearrangements
Tumor Fusion PortalGAGE12C
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGAGE12C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GAGE12C
dbVarGAGE12C
ClinVarGAGE12C
1000_GenomesGAGE12C 
Exome Variant ServerGAGE12C
ExAC (Exome Aggregation Consortium)ENSG00000237671
GNOMAD BrowserENSG00000237671
Genetic variants : HAPMAP729422
Genomic Variants (DGV)GAGE12C [DGVbeta]
DECIPHERGAGE12C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGAGE12C 
Mutations
ICGC Data PortalGAGE12C 
TCGA Data PortalGAGE12C 
Broad Tumor PortalGAGE12C
OASIS PortalGAGE12C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGAGE12C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGAGE12C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GAGE12C
DgiDB (Drug Gene Interaction Database)GAGE12C
DoCM (Curated mutations)GAGE12C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GAGE12C (select a term)
intoGenGAGE12C
Cancer3DGAGE12C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300727   
Orphanet
DisGeNETGAGE12C
MedgenGAGE12C
Genetic Testing Registry GAGE12C
NextProtA1L429 [Medical]
TSGene729422
GENETestsGAGE12C
Target ValidationGAGE12C
Huge Navigator GAGE12C [HugePedia]
snp3D : Map Gene to Disease729422
BioCentury BCIQGAGE12C
ClinGenGAGE12C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD729422
Chemical/Pharm GKB GenePA145148771
Clinical trialGAGE12C
Miscellaneous
canSAR (ICR)GAGE12C (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGAGE12C
EVEXGAGE12C
GoPubMedGAGE12C
iHOPGAGE12C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:59:37 CET 2017

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