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GAGE12D (G antigen 12D)

Identity

Alias_symbol (synonym)OTTHUMG00000024145
Other aliasGAGE-12B
HGNC (Hugo) GAGE12D
LocusID (NCBI) 100132399
Atlas_Id 63665
Location Xp11.23  [Link to chromosome band Xp11]
Location_base_pair Starts at 49322026 and ends at 49529995 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GAGE12D   31904
Cards
Entrez_Gene (NCBI)GAGE12D  100132399  G antigen 12D
AliasesGAGE-12B
GeneCards (Weizmann)GAGE12D
Ensembl hg19 (Hinxton)ENSG00000227488 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000227488 [Gene_View]  chrX:49322026-49529995 [Contig_View]  GAGE12D [Vega]
ICGC DataPortalENSG00000227488
TCGA cBioPortalGAGE12D
AceView (NCBI)GAGE12D
Genatlas (Paris)GAGE12D
WikiGenes100132399
SOURCE (Princeton)GAGE12D
Genetics Home Reference (NIH)GAGE12D
Genomic and cartography
GoldenPath hg38 (UCSC)GAGE12D  -     chrX:49322026-49529995 +  Xp11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GAGE12D  -     Xp11.23   [Description]    (hg19-Feb_2009)
EnsemblGAGE12D - Xp11.23 [CytoView hg19]  GAGE12D - Xp11.23 [CytoView hg38]
Mapping of homologs : NCBIGAGE12D [Mapview hg19]  GAGE12D [Mapview hg38]
OMIM300728   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001127199
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GAGE12D
Cluster EST : UnigeneHs.645554 [ NCBI ]
CGAP (NCI)Hs.645554
Alternative Splicing GalleryENSG00000227488
Gene ExpressionGAGE12D [ NCBI-GEO ]   GAGE12D [ EBI - ARRAY_EXPRESS ]   GAGE12D [ SEEK ]   GAGE12D [ MEM ]
Gene Expression Viewer (FireBrowse)GAGE12D [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100132399
GTEX Portal (Tissue expression)GAGE12D
Human Protein AtlasENSG00000227488-GAGE12D [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA1L429   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA1L429  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA1L429
Splice isoforms : SwissVarA1L429
PhosPhoSitePlusA1L429
Domains : Interpro (EBI)GAGE    GAGE_fam   
Domain families : Pfam (Sanger)GAGE (PF05831)   
Domain families : Pfam (NCBI)pfam05831   
Domain families : Smart (EMBL)GAGE (SM01379)  
Conserved Domain (NCBI)GAGE12D
DMDM Disease mutations100132399
Blocks (Seattle)GAGE12D
SuperfamilyA1L429
Human Protein Atlas [tissue]ENSG00000227488-GAGE12D [tissue]
Peptide AtlasA1L429
IPIIPI00011530   
Protein Interaction databases
DIP (DOE-UCLA)A1L429
IntAct (EBI)A1L429
FunCoupENSG00000227488
BioGRIDGAGE12D
STRING (EMBL)GAGE12D
ZODIACGAGE12D
Ontologies - Pathways
QuickGOA1L429
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkGAGE12D
Atlas of Cancer Signalling NetworkGAGE12D
Wikipedia pathwaysGAGE12D
Orthology - Evolution
OrthoDB100132399
GeneTree (enSembl)ENSG00000227488
Phylogenetic Trees/Animal Genes : TreeFamGAGE12D
HOVERGENA1L429
HOGENOMA1L429
Homologs : HomoloGeneGAGE12D
Homology/Alignments : Family Browser (UCSC)GAGE12D
Gene fusions - Rearrangements
Tumor Fusion PortalGAGE12D
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGAGE12D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GAGE12D
dbVarGAGE12D
ClinVarGAGE12D
1000_GenomesGAGE12D 
Exome Variant ServerGAGE12D
ExAC (Exome Aggregation Consortium)ENSG00000227488
GNOMAD BrowserENSG00000227488
Genetic variants : HAPMAP100132399
Genomic Variants (DGV)GAGE12D [DGVbeta]
DECIPHERGAGE12D [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGAGE12D 
Mutations
ICGC Data PortalGAGE12D 
TCGA Data PortalGAGE12D 
Broad Tumor PortalGAGE12D
OASIS PortalGAGE12D [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGAGE12D  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGAGE12D
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GAGE12D
DgiDB (Drug Gene Interaction Database)GAGE12D
DoCM (Curated mutations)GAGE12D (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GAGE12D (select a term)
intoGenGAGE12D
Cancer3DGAGE12D(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300728   
Orphanet
DisGeNETGAGE12D
MedgenGAGE12D
Genetic Testing Registry GAGE12D
NextProtA1L429 [Medical]
TSGene100132399
GENETestsGAGE12D
Target ValidationGAGE12D
Huge Navigator GAGE12D [HugePedia]
snp3D : Map Gene to Disease100132399
BioCentury BCIQGAGE12D
ClinGenGAGE12D
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100132399
Chemical/Pharm GKB GenePA145148773
Clinical trialGAGE12D
Miscellaneous
canSAR (ICR)GAGE12D (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGAGE12D
EVEXGAGE12D
GoPubMedGAGE12D
iHOPGAGE12D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:59:37 CET 2017

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