Atlas of Genetics and Cytogenetics in Oncology and Haematology


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GAGE12F (G antigen 12F)

Identity

Alias_symbol (synonym)OTTHUMG00000024147
Other alias-
HGNC (Hugo) GAGE12F
LocusID (NCBI) 100008586
Atlas_Id 63667
Location Xp11.23  [Link to chromosome band Xp11]
Location_base_pair Starts at 49341114 and ends at 49529985 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GAGE12F   31906
Cards
Entrez_Gene (NCBI)GAGE12F  100008586  G antigen 12F
Aliases
GeneCards (Weizmann)GAGE12F
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chrX:49341114-49529985 [Contig_View]  GAGE12F [Vega]
TCGA cBioPortalGAGE12F
AceView (NCBI)GAGE12F
Genatlas (Paris)GAGE12F
WikiGenes100008586
SOURCE (Princeton)GAGE12F
Genetics Home Reference (NIH)GAGE12F
Genomic and cartography
GoldenPath hg38 (UCSC)GAGE12F  -     chrX:49341114-49529985 +  Xp11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GAGE12F  -     Xp11.23   [Description]    (hg19-Feb_2009)
EnsemblGAGE12F - Xp11.23 [CytoView hg19]  GAGE12F - Xp11.23 [CytoView hg38]
Mapping of homologs : NCBIGAGE12F [Mapview hg19]  GAGE12F [Mapview hg38]
OMIM300730   
Gene and transcription
Genbank (Entrez)AF055474 AF058988 AI381509 BC031628 BC069086
RefSeq transcript (Entrez)NM_001098405
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GAGE12F
Cluster EST : UnigeneHs.695912 [ NCBI ]
CGAP (NCI)Hs.695912
Gene ExpressionGAGE12F [ NCBI-GEO ]   GAGE12F [ EBI - ARRAY_EXPRESS ]   GAGE12F [ SEEK ]   GAGE12F [ MEM ]
Gene Expression Viewer (FireBrowse)GAGE12F [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100008586
GTEX Portal (Tissue expression)GAGE12F
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CL80   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CL80  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CL80
Splice isoforms : SwissVarP0CL80
PhosPhoSitePlusP0CL80
Domains : Interpro (EBI)GAGE    GAGE_fam   
Domain families : Pfam (Sanger)GAGE (PF05831)   
Domain families : Pfam (NCBI)pfam05831   
Domain families : Smart (EMBL)GAGE (SM01379)  
Conserved Domain (NCBI)GAGE12F
DMDM Disease mutations100008586
Blocks (Seattle)GAGE12F
SuperfamilyP0CL80
Peptide AtlasP0CL80
IPIIPI00008809   
Protein Interaction databases
DIP (DOE-UCLA)P0CL80
IntAct (EBI)P0CL80
BioGRIDGAGE12F
STRING (EMBL)GAGE12F
ZODIACGAGE12F
Ontologies - Pathways
QuickGOP0CL80
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkGAGE12F
Atlas of Cancer Signalling NetworkGAGE12F
Wikipedia pathwaysGAGE12F
Orthology - Evolution
OrthoDB100008586
Phylogenetic Trees/Animal Genes : TreeFamGAGE12F
HOVERGENP0CL80
HOGENOMP0CL80
Homologs : HomoloGeneGAGE12F
Homology/Alignments : Family Browser (UCSC)GAGE12F
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGAGE12F [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GAGE12F
dbVarGAGE12F
ClinVarGAGE12F
1000_GenomesGAGE12F 
Exome Variant ServerGAGE12F
ExAC (Exome Aggregation Consortium)GAGE12F (select the gene name)
Genetic variants : HAPMAP100008586
Genomic Variants (DGV)GAGE12F [DGVbeta]
DECIPHERGAGE12F [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGAGE12F 
Mutations
ICGC Data PortalGAGE12F 
TCGA Data PortalGAGE12F 
Broad Tumor PortalGAGE12F
OASIS PortalGAGE12F [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGAGE12F  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGAGE12F
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GAGE12F
DgiDB (Drug Gene Interaction Database)GAGE12F
DoCM (Curated mutations)GAGE12F (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GAGE12F (select a term)
intoGenGAGE12F
Cancer3DGAGE12F(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300730   
Orphanet
MedgenGAGE12F
Genetic Testing Registry GAGE12F
NextProtP0CL80 [Medical]
TSGene100008586
GENETestsGAGE12F
Target ValidationGAGE12F
Huge Navigator GAGE12F [HugePedia]
snp3D : Map Gene to Disease100008586
BioCentury BCIQGAGE12F
ClinGenGAGE12F
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100008586
Chemical/Pharm GKB GenePA145148777
Clinical trialGAGE12F
Miscellaneous
canSAR (ICR)GAGE12F (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGAGE12F
EVEXGAGE12F
GoPubMedGAGE12F
iHOPGAGE12F
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:09:06 CEST 2017

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