Atlas of Genetics and Cytogenetics in Oncology and Haematology


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GAGE12G (G antigen 12G)

Identity

Alias_symbol (synonym)OTTHUMG00000024148
Other aliasAL4
CT4.7
GAGE-12G
HGNC (Hugo) GAGE12G
LocusID (NCBI) 645073
Atlas_Id 63668
Location Xp11.23  [Link to chromosome band Xp11]
Location_base_pair Starts at 49341150 and ends at 49529985 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GAGE12G   31907
Cards
Entrez_Gene (NCBI)GAGE12G  645073  G antigen 12G
AliasesAL4; CT4.7; GAGE-12G
GeneCards (Weizmann)GAGE12G
Ensembl hg19 (Hinxton)ENSG00000215269 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000215269 [Gene_View]  chrX:49341150-49529985 [Contig_View]  GAGE12G [Vega]
ICGC DataPortalENSG00000215269
TCGA cBioPortalGAGE12G
AceView (NCBI)GAGE12G
Genatlas (Paris)GAGE12G
WikiGenes645073
SOURCE (Princeton)GAGE12G
Genetics Home Reference (NIH)GAGE12G
Genomic and cartography
GoldenPath hg38 (UCSC)GAGE12G  -     chrX:49341150-49529985 +  Xp11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GAGE12G  -     Xp11.23   [Description]    (hg19-Feb_2009)
EnsemblGAGE12G - Xp11.23 [CytoView hg19]  GAGE12G - Xp11.23 [CytoView hg38]
Mapping of homologs : NCBIGAGE12G [Mapview hg19]  GAGE12G [Mapview hg38]
OMIM300731   
Gene and transcription
Genbank (Entrez)AF055474 AF058988 BC031628 BC069086 BC081536
RefSeq transcript (Entrez)NM_001098409
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GAGE12G
Cluster EST : UnigeneHs.695912 [ NCBI ]
CGAP (NCI)Hs.695912
Alternative Splicing GalleryENSG00000215269
Gene ExpressionGAGE12G [ NCBI-GEO ]   GAGE12G [ EBI - ARRAY_EXPRESS ]   GAGE12G [ SEEK ]   GAGE12G [ MEM ]
Gene Expression Viewer (FireBrowse)GAGE12G [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)645073
GTEX Portal (Tissue expression)GAGE12G
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CL81   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CL81  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CL81
Splice isoforms : SwissVarP0CL81
PhosPhoSitePlusP0CL81
Domains : Interpro (EBI)GAGE    GAGE_fam   
Domain families : Pfam (Sanger)GAGE (PF05831)   
Domain families : Pfam (NCBI)pfam05831   
Domain families : Smart (EMBL)GAGE (SM01379)  
Conserved Domain (NCBI)GAGE12G
DMDM Disease mutations645073
Blocks (Seattle)GAGE12G
SuperfamilyP0CL81
Human Protein AtlasENSG00000215269
Peptide AtlasP0CL81
Protein Interaction databases
DIP (DOE-UCLA)P0CL81
IntAct (EBI)P0CL81
FunCoupENSG00000215269
BioGRIDGAGE12G
STRING (EMBL)GAGE12G
ZODIACGAGE12G
Ontologies - Pathways
QuickGOP0CL81
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkGAGE12G
Atlas of Cancer Signalling NetworkGAGE12G
Wikipedia pathwaysGAGE12G
Orthology - Evolution
OrthoDB645073
GeneTree (enSembl)ENSG00000215269
Phylogenetic Trees/Animal Genes : TreeFamGAGE12G
HOVERGENP0CL81
HOGENOMP0CL81
Homologs : HomoloGeneGAGE12G
Homology/Alignments : Family Browser (UCSC)GAGE12G
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGAGE12G [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GAGE12G
dbVarGAGE12G
ClinVarGAGE12G
1000_GenomesGAGE12G 
Exome Variant ServerGAGE12G
ExAC (Exome Aggregation Consortium)GAGE12G (select the gene name)
Genetic variants : HAPMAP645073
Genomic Variants (DGV)GAGE12G [DGVbeta]
DECIPHERGAGE12G [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGAGE12G 
Mutations
ICGC Data PortalGAGE12G 
TCGA Data PortalGAGE12G 
Broad Tumor PortalGAGE12G
OASIS PortalGAGE12G [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGAGE12G  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGAGE12G
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GAGE12G
DgiDB (Drug Gene Interaction Database)GAGE12G
DoCM (Curated mutations)GAGE12G (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GAGE12G (select a term)
intoGenGAGE12G
Cancer3DGAGE12G(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300731   
Orphanet
MedgenGAGE12G
Genetic Testing Registry GAGE12G
NextProtP0CL81 [Medical]
TSGene645073
GENETestsGAGE12G
Target ValidationGAGE12G
Huge Navigator GAGE12G [HugePedia]
snp3D : Map Gene to Disease645073
BioCentury BCIQGAGE12G
ClinGenGAGE12G
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD645073
Chemical/Pharm GKB GenePA145148778
Clinical trialGAGE12G
Miscellaneous
canSAR (ICR)GAGE12G (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGAGE12G
EVEXGAGE12G
GoPubMedGAGE12G
iHOPGAGE12G
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:09:06 CEST 2017

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