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GAGE12H (G antigen 12H)

Identity

Alias_symbol (synonym)OTTHUMG00000024149
Other alias-
HGNC (Hugo) GAGE12H
LocusID (NCBI) 729442
Atlas_Id 63669
Location Xp11.23  [Link to chromosome band Xp11]
Location_base_pair Starts at 49532177 and ends at 49539541 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GAGE12H   31908
Cards
Entrez_Gene (NCBI)GAGE12H  729442  G antigen 12H
Aliases
GeneCards (Weizmann)GAGE12H
Ensembl hg19 (Hinxton)ENSG00000224902 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000224902 [Gene_View]  chrX:49532177-49539541 [Contig_View]  GAGE12H [Vega]
ICGC DataPortalENSG00000224902
TCGA cBioPortalGAGE12H
AceView (NCBI)GAGE12H
Genatlas (Paris)GAGE12H
WikiGenes729442
SOURCE (Princeton)GAGE12H
Genetics Home Reference (NIH)GAGE12H
Genomic and cartography
GoldenPath hg38 (UCSC)GAGE12H  -     chrX:49532177-49539541 +  Xp11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GAGE12H  -     Xp11.23   [Description]    (hg19-Feb_2009)
EnsemblGAGE12H - Xp11.23 [CytoView hg19]  GAGE12H - Xp11.23 [CytoView hg38]
Mapping of homologs : NCBIGAGE12H [Mapview hg19]  GAGE12H [Mapview hg38]
OMIM300732   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001098410
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GAGE12H
Cluster EST : UnigeneHs.632813 [ NCBI ]
CGAP (NCI)Hs.632813
Alternative Splicing GalleryENSG00000224902
Gene ExpressionGAGE12H [ NCBI-GEO ]   GAGE12H [ EBI - ARRAY_EXPRESS ]   GAGE12H [ SEEK ]   GAGE12H [ MEM ]
Gene Expression Viewer (FireBrowse)GAGE12H [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)729442
GTEX Portal (Tissue expression)GAGE12H
Human Protein AtlasENSG00000224902-GAGE12H [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NDE8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NDE8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NDE8
Splice isoforms : SwissVarA6NDE8
PhosPhoSitePlusA6NDE8
Domains : Interpro (EBI)GAGE    GAGE_fam   
Domain families : Pfam (Sanger)GAGE (PF05831)   
Domain families : Pfam (NCBI)pfam05831   
Domain families : Smart (EMBL)GAGE (SM01379)  
Conserved Domain (NCBI)GAGE12H
DMDM Disease mutations729442
Blocks (Seattle)GAGE12H
SuperfamilyA6NDE8
Human Protein Atlas [tissue]ENSG00000224902-GAGE12H [tissue]
Peptide AtlasA6NDE8
IPIIPI00645726   
Protein Interaction databases
DIP (DOE-UCLA)A6NDE8
IntAct (EBI)A6NDE8
FunCoupENSG00000224902
BioGRIDGAGE12H
STRING (EMBL)GAGE12H
ZODIACGAGE12H
Ontologies - Pathways
QuickGOA6NDE8
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkGAGE12H
Atlas of Cancer Signalling NetworkGAGE12H
Wikipedia pathwaysGAGE12H
Orthology - Evolution
OrthoDB729442
GeneTree (enSembl)ENSG00000224902
Phylogenetic Trees/Animal Genes : TreeFamGAGE12H
HOVERGENA6NDE8
HOGENOMA6NDE8
Homologs : HomoloGeneGAGE12H
Homology/Alignments : Family Browser (UCSC)GAGE12H
Gene fusions - Rearrangements
Tumor Fusion PortalGAGE12H
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGAGE12H [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GAGE12H
dbVarGAGE12H
ClinVarGAGE12H
1000_GenomesGAGE12H 
Exome Variant ServerGAGE12H
ExAC (Exome Aggregation Consortium)ENSG00000224902
GNOMAD BrowserENSG00000224902
Genetic variants : HAPMAP729442
Genomic Variants (DGV)GAGE12H [DGVbeta]
DECIPHERGAGE12H [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGAGE12H 
Mutations
ICGC Data PortalGAGE12H 
TCGA Data PortalGAGE12H 
Broad Tumor PortalGAGE12H
OASIS PortalGAGE12H [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGAGE12H  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGAGE12H
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GAGE12H
DgiDB (Drug Gene Interaction Database)GAGE12H
DoCM (Curated mutations)GAGE12H (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GAGE12H (select a term)
intoGenGAGE12H
Cancer3DGAGE12H(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300732   
Orphanet
DisGeNETGAGE12H
MedgenGAGE12H
Genetic Testing Registry GAGE12H
NextProtA6NDE8 [Medical]
TSGene729442
GENETestsGAGE12H
Target ValidationGAGE12H
Huge Navigator GAGE12H [HugePedia]
snp3D : Map Gene to Disease729442
BioCentury BCIQGAGE12H
ClinGenGAGE12H
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD729442
Chemical/Pharm GKB GenePA145148780
Clinical trialGAGE12H
Miscellaneous
canSAR (ICR)GAGE12H (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGAGE12H
EVEXGAGE12H
GoPubMedGAGE12H
iHOPGAGE12H
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:59:38 CET 2017

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