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GAGE12I (G antigen 12I)

Identity

Alias_namesGAGE7B
G antigen 7B
Alias_symbol (synonym)OTTHUMG00000067390
Other aliasAL4
CT4.7
GAGE-7B
HGNC (Hugo) GAGE12I
LocusID (NCBI) 26748
Atlas_Id 40675
Location Xp11.23  [Link to chromosome band Xp11]
Location_base_pair Starts at 49341210 and ends at 49529985 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GAGE12I   4105
Cards
Entrez_Gene (NCBI)GAGE12I  26748  G antigen 12I
AliasesAL4; CT4.7; GAGE-7B; GAGE7B
GeneCards (Weizmann)GAGE12I
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chrX:49341210-49529985 [Contig_View]  GAGE12I [Vega]
TCGA cBioPortalGAGE12I
AceView (NCBI)GAGE12I
Genatlas (Paris)GAGE12I
WikiGenes26748
SOURCE (Princeton)GAGE12I
Genetics Home Reference (NIH)GAGE12I
Genomic and cartography
GoldenPath hg38 (UCSC)GAGE12I  -     chrX:49341210-49529985 +  Xp11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GAGE12I  -     Xp11.23   [Description]    (hg19-Feb_2009)
EnsemblGAGE12I - Xp11.23 [CytoView hg19]  GAGE12I - Xp11.23 [CytoView hg38]
Mapping of homologs : NCBIGAGE12I [Mapview hg19]  GAGE12I [Mapview hg38]
OMIM300637   
Gene and transcription
Genbank (Entrez)AF055474 AF058988 BC031628 BC069086 BC081536
RefSeq transcript (Entrez)NM_001477
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GAGE12I
Cluster EST : UnigeneHs.695912 [ NCBI ]
CGAP (NCI)Hs.695912
Gene ExpressionGAGE12I [ NCBI-GEO ]   GAGE12I [ EBI - ARRAY_EXPRESS ]   GAGE12I [ SEEK ]   GAGE12I [ MEM ]
Gene Expression Viewer (FireBrowse)GAGE12I [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26748
GTEX Portal (Tissue expression)GAGE12I
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CL82   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CL82  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CL82
Splice isoforms : SwissVarP0CL82
PhosPhoSitePlusP0CL82
Domains : Interpro (EBI)GAGE    GAGE_fam   
Domain families : Pfam (Sanger)GAGE (PF05831)   
Domain families : Pfam (NCBI)pfam05831   
Domain families : Smart (EMBL)GAGE (SM01379)  
Conserved Domain (NCBI)GAGE12I
DMDM Disease mutations26748
Blocks (Seattle)GAGE12I
SuperfamilyP0CL82
Peptide AtlasP0CL82
HPRD06573
Protein Interaction databases
DIP (DOE-UCLA)P0CL82
IntAct (EBI)P0CL82
BioGRIDGAGE12I
STRING (EMBL)GAGE12I
ZODIACGAGE12I
Ontologies - Pathways
QuickGOP0CL82
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkGAGE12I
Atlas of Cancer Signalling NetworkGAGE12I
Wikipedia pathwaysGAGE12I
Orthology - Evolution
OrthoDB26748
Phylogenetic Trees/Animal Genes : TreeFamGAGE12I
HOVERGENP0CL82
HOGENOMP0CL82
Homologs : HomoloGeneGAGE12I
Homology/Alignments : Family Browser (UCSC)GAGE12I
Gene fusions - Rearrangements
Fusion : QuiverGAGE12I
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGAGE12I [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GAGE12I
dbVarGAGE12I
ClinVarGAGE12I
1000_GenomesGAGE12I 
Exome Variant ServerGAGE12I
Varsome BrowserGAGE12I
Genetic variants : HAPMAP26748
Genomic Variants (DGV)GAGE12I [DGVbeta]
DECIPHERGAGE12I [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGAGE12I 
Mutations
ICGC Data PortalGAGE12I 
TCGA Data PortalGAGE12I 
Broad Tumor PortalGAGE12I
OASIS PortalGAGE12I [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDGAGE12I
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GAGE12I
DgiDB (Drug Gene Interaction Database)GAGE12I
DoCM (Curated mutations)GAGE12I (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GAGE12I (select a term)
intoGenGAGE12I
Cancer3DGAGE12I(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300637   
Orphanet
DisGeNETGAGE12I
MedgenGAGE12I
Genetic Testing Registry GAGE12I
NextProtP0CL82 [Medical]
TSGene26748
GENETestsGAGE12I
Target ValidationGAGE12I
Huge Navigator GAGE12I [HugePedia]
snp3D : Map Gene to Disease26748
BioCentury BCIQGAGE12I
ClinGenGAGE12I
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26748
Chemical/Pharm GKB GenePA162389185
Clinical trialGAGE12I
Miscellaneous
canSAR (ICR)GAGE12I (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGAGE12I
EVEXGAGE12I
GoPubMedGAGE12I
iHOPGAGE12I
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Aug 27 11:24:07 CEST 2018

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