Atlas of Genetics and Cytogenetics in Oncology and Haematology


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GAGE12J (G antigen 12J)

Identity

Alias_namesGAGE11
G antigen 11
Alias_symbol (synonym)OTTHUMG00000024137
Other alias
HGNC (Hugo) GAGE12J
LocusID (NCBI) 729396
Atlas_Id 63670
Location Xp11.23  [Link to chromosome band Xp11]
Location_base_pair Starts at 49178509 and ends at 49294588 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GAGE12J   17778
Cards
Entrez_Gene (NCBI)GAGE12J  729396  G antigen 12J
AliasesGAGE11
GeneCards (Weizmann)GAGE12J
Ensembl hg19 (Hinxton)ENSG00000224659 [Gene_View]  chrX:49178509-49294588 [Contig_View]  GAGE12J [Vega]
Ensembl hg38 (Hinxton)ENSG00000224659 [Gene_View]  chrX:49178509-49294588 [Contig_View]  GAGE12J [Vega]
ICGC DataPortalENSG00000224659
TCGA cBioPortalGAGE12J
AceView (NCBI)GAGE12J
Genatlas (Paris)GAGE12J
WikiGenes729396
SOURCE (Princeton)GAGE12J
Genetics Home Reference (NIH)GAGE12J
Genomic and cartography
GoldenPath hg19 (UCSC)GAGE12J  -     chrX:49178509-49294588 +  Xp11.23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GAGE12J  -     Xp11.23   [Description]    (hg38-Dec_2013)
EnsemblGAGE12J - Xp11.23 [CytoView hg19]  GAGE12J - Xp11.23 [CytoView hg38]
Mapping of homologs : NCBIGAGE12J [Mapview hg19]  GAGE12J [Mapview hg38]
OMIM300733   
Gene and transcription
Genbank (Entrez)AK310423 BG186708 BX108227
RefSeq transcript (Entrez)NM_001098406
RefSeq genomic (Entrez)NC_000023 NC_018934 NT_079573 NW_004929439
Consensus coding sequences : CCDS (NCBI)GAGE12J
Cluster EST : UnigeneHs.695912 [ NCBI ]
CGAP (NCI)Hs.695912
Alternative Splicing GalleryENSG00000224659
Gene ExpressionGAGE12J [ NCBI-GEO ]   GAGE12J [ EBI - ARRAY_EXPRESS ]   GAGE12J [ SEEK ]   GAGE12J [ MEM ]
Gene Expression Viewer (FireBrowse)GAGE12J [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)729396
GTEX Portal (Tissue expression)GAGE12J
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NER3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NER3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NER3
Splice isoforms : SwissVarA6NER3
PhosPhoSitePlusA6NER3
Domains : Interpro (EBI)GAGE   
Domain families : Pfam (Sanger)GAGE (PF05831)   
Domain families : Pfam (NCBI)pfam05831   
Conserved Domain (NCBI)GAGE12J
DMDM Disease mutations729396
Blocks (Seattle)GAGE12J
SuperfamilyA6NER3
Human Protein AtlasENSG00000224659
Peptide AtlasA6NER3
IPIIPI00336105   
Protein Interaction databases
DIP (DOE-UCLA)A6NER3
IntAct (EBI)A6NER3
FunCoupENSG00000224659
BioGRIDGAGE12J
STRING (EMBL)GAGE12J
ZODIACGAGE12J
Ontologies - Pathways
QuickGOA6NER3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkGAGE12J
Atlas of Cancer Signalling NetworkGAGE12J
Wikipedia pathwaysGAGE12J
Orthology - Evolution
OrthoDB729396
GeneTree (enSembl)ENSG00000224659
Phylogenetic Trees/Animal Genes : TreeFamGAGE12J
HOVERGENA6NER3
HOGENOMA6NER3
Homologs : HomoloGeneGAGE12J
Homology/Alignments : Family Browser (UCSC)GAGE12J
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGAGE12J [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GAGE12J
dbVarGAGE12J
ClinVarGAGE12J
1000_GenomesGAGE12J 
Exome Variant ServerGAGE12J
ExAC (Exome Aggregation Consortium)GAGE12J (select the gene name)
Genetic variants : HAPMAP729396
Genomic Variants (DGV)GAGE12J [DGVbeta]
DECIPHER (Syndromes)X:49178509-49294588  ENSG00000224659
CONAN: Copy Number AnalysisGAGE12J 
Mutations
ICGC Data PortalGAGE12J 
TCGA Data PortalGAGE12J 
Broad Tumor PortalGAGE12J
OASIS PortalGAGE12J [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGAGE12J  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGAGE12J
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GAGE12J
DgiDB (Drug Gene Interaction Database)GAGE12J
DoCM (Curated mutations)GAGE12J (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GAGE12J (select a term)
intoGenGAGE12J
Cancer3DGAGE12J(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300733   
Orphanet
MedgenGAGE12J
Genetic Testing Registry GAGE12J
NextProtA6NER3 [Medical]
TSGene729396
GENETestsGAGE12J
Huge Navigator GAGE12J [HugePedia]
snp3D : Map Gene to Disease729396
BioCentury BCIQGAGE12J
ClinGenGAGE12J
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD729396
Chemical/Pharm GKB GenePA162389200
Clinical trialGAGE12J
Miscellaneous
canSAR (ICR)GAGE12J (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGAGE12J
EVEXGAGE12J
GoPubMedGAGE12J
iHOPGAGE12J
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:05:42 CET 2017

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