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GAGE13 (G antigen 13)

Identity

Alias_namesGAGE12A
G antigen 12A
Alias_symbol (synonym)OTTHUMG00000024138
Other aliasGAGE-12A
GAGE-13
HGNC (Hugo) GAGE13
LocusID (NCBI) 645051
Atlas_Id 63671
Location Xp11.23  [Link to chromosome band Xp11]
Location_base_pair Starts at 49331603 and ends at 49338952 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GAGE13   29081
Cards
Entrez_Gene (NCBI)GAGE13  645051  G antigen 13
AliasesGAGE-12A; GAGE-13; GAGE12A
GeneCards (Weizmann)GAGE13
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chrX:49331603-49338952 [Contig_View]  GAGE13 [Vega]
TCGA cBioPortalGAGE13
AceView (NCBI)GAGE13
Genatlas (Paris)GAGE13
WikiGenes645051
SOURCE (Princeton)GAGE13
Genetics Home Reference (NIH)GAGE13
Genomic and cartography
GoldenPath hg38 (UCSC)GAGE13  -     chrX:49331603-49338952 +  Xp11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GAGE13  -     Xp11.23   [Description]    (hg19-Feb_2009)
EnsemblGAGE13 - Xp11.23 [CytoView hg19]  GAGE13 - Xp11.23 [CytoView hg38]
Mapping of homologs : NCBIGAGE13 [Mapview hg19]  GAGE13 [Mapview hg38]
OMIM300734   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001098412
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GAGE13
Gene ExpressionGAGE13 [ NCBI-GEO ]   GAGE13 [ EBI - ARRAY_EXPRESS ]   GAGE13 [ SEEK ]   GAGE13 [ MEM ]
Gene Expression Viewer (FireBrowse)GAGE13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)645051
GTEX Portal (Tissue expression)GAGE13
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ4V321   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ4V321  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ4V321
Splice isoforms : SwissVarQ4V321
PhosPhoSitePlusQ4V321
Domains : Interpro (EBI)GAGE    GAGE_fam   
Domain families : Pfam (Sanger)GAGE (PF05831)   
Domain families : Pfam (NCBI)pfam05831   
Domain families : Smart (EMBL)GAGE (SM01379)  
Conserved Domain (NCBI)GAGE13
DMDM Disease mutations645051
Blocks (Seattle)GAGE13
SuperfamilyQ4V321
Peptide AtlasQ4V321
IPIIPI00645355   
Protein Interaction databases
DIP (DOE-UCLA)Q4V321
IntAct (EBI)Q4V321
BioGRIDGAGE13
STRING (EMBL)GAGE13
ZODIACGAGE13
Ontologies - Pathways
QuickGOQ4V321
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkGAGE13
Atlas of Cancer Signalling NetworkGAGE13
Wikipedia pathwaysGAGE13
Orthology - Evolution
OrthoDB645051
Phylogenetic Trees/Animal Genes : TreeFamGAGE13
HOVERGENQ4V321
HOGENOMQ4V321
Homologs : HomoloGeneGAGE13
Homology/Alignments : Family Browser (UCSC)GAGE13
Gene fusions - Rearrangements
Tumor Fusion PortalGAGE13
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGAGE13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GAGE13
dbVarGAGE13
ClinVarGAGE13
1000_GenomesGAGE13 
Exome Variant ServerGAGE13
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP645051
Genomic Variants (DGV)GAGE13 [DGVbeta]
DECIPHERGAGE13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGAGE13 
Mutations
ICGC Data PortalGAGE13 
TCGA Data PortalGAGE13 
Broad Tumor PortalGAGE13
OASIS PortalGAGE13 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDGAGE13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GAGE13
DgiDB (Drug Gene Interaction Database)GAGE13
DoCM (Curated mutations)GAGE13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GAGE13 (select a term)
intoGenGAGE13
Cancer3DGAGE13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300734   
Orphanet
DisGeNETGAGE13
MedgenGAGE13
Genetic Testing Registry GAGE13
NextProtQ4V321 [Medical]
TSGene645051
GENETestsGAGE13
Target ValidationGAGE13
Huge Navigator GAGE13 [HugePedia]
snp3D : Map Gene to Disease645051
BioCentury BCIQGAGE13
ClinGenGAGE13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD645051
Chemical/Pharm GKB GenePA162389215
Clinical trialGAGE13
Miscellaneous
canSAR (ICR)GAGE13 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGAGE13
EVEXGAGE13
GoPubMedGAGE13
iHOPGAGE13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 19:30:46 CET 2017

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