Atlas of Genetics and Cytogenetics in Oncology and Haematology


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GAGE2B (G antigen 2B)

Identity

Other aliasCT4.2
GAGE-2
GAGE-2B
HGNC (Hugo) GAGE2B
LocusID (NCBI) 645037
Atlas_Id 63673
Location Xp11.23  [Link to chromosome band Xp11]
Location_base_pair Starts at 49235708 and ends at 49242997 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GAGE2B   31957
Cards
Entrez_Gene (NCBI)GAGE2B  645037  G antigen 2B
AliasesCT4.2; GAGE-2; GAGE-2B
GeneCards (Weizmann)GAGE2B
Ensembl hg19 (Hinxton) [Gene_View]  chrX:49235708-49242997 [Contig_View]  GAGE2B [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chrX:49235708-49242997 [Contig_View]  GAGE2B [Vega]
TCGA cBioPortalGAGE2B
AceView (NCBI)GAGE2B
Genatlas (Paris)GAGE2B
WikiGenes645037
SOURCE (Princeton)GAGE2B
Genetics Home Reference (NIH)GAGE2B
Genomic and cartography
GoldenPath hg19 (UCSC)GAGE2B  -     chrX:49235708-49242997 +  Xp11.23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GAGE2B  -     Xp11.23   [Description]    (hg38-Dec_2013)
EnsemblGAGE2B - Xp11.23 [CytoView hg19]  GAGE2B - Xp11.23 [CytoView hg38]
Mapping of homologs : NCBIGAGE2B [Mapview hg19]  GAGE2B [Mapview hg38]
OMIM300726   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001098411
RefSeq genomic (Entrez)NC_000023 NT_079573
Consensus coding sequences : CCDS (NCBI)GAGE2B
Cluster EST : UnigeneHs.714681 [ NCBI ]
CGAP (NCI)Hs.714681
Gene ExpressionGAGE2B [ NCBI-GEO ]   GAGE2B [ EBI - ARRAY_EXPRESS ]   GAGE2B [ SEEK ]   GAGE2B [ MEM ]
Gene Expression Viewer (FireBrowse)GAGE2B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)645037
GTEX Portal (Tissue expression)GAGE2B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13066   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13066  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13066
Splice isoforms : SwissVarQ13066
PhosPhoSitePlusQ13066
Domains : Interpro (EBI)GAGE   
Domain families : Pfam (Sanger)GAGE (PF05831)   
Domain families : Pfam (NCBI)pfam05831   
Conserved Domain (NCBI)GAGE2B
DMDM Disease mutations645037
Blocks (Seattle)GAGE2B
SuperfamilyQ13066
Peptide AtlasQ13066
Protein Interaction databases
DIP (DOE-UCLA)Q13066
IntAct (EBI)Q13066
BioGRIDGAGE2B
STRING (EMBL)GAGE2B
ZODIACGAGE2B
Ontologies - Pathways
QuickGOQ13066
Ontology : AmiGOmolecular_function  cellular_component  biological_process  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  
NDEx NetworkGAGE2B
Atlas of Cancer Signalling NetworkGAGE2B
Wikipedia pathwaysGAGE2B
Orthology - Evolution
OrthoDB645037
Phylogenetic Trees/Animal Genes : TreeFamGAGE2B
HOVERGENQ13066
HOGENOMQ13066
Homologs : HomoloGeneGAGE2B
Homology/Alignments : Family Browser (UCSC)GAGE2B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGAGE2B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GAGE2B
dbVarGAGE2B
ClinVarGAGE2B
1000_GenomesGAGE2B 
Exome Variant ServerGAGE2B
ExAC (Exome Aggregation Consortium)GAGE2B (select the gene name)
Genetic variants : HAPMAP645037
Genomic Variants (DGV)GAGE2B [DGVbeta]
DECIPHER (Syndromes)X:49235708-49242997  
CONAN: Copy Number AnalysisGAGE2B 
Mutations
ICGC Data PortalGAGE2B 
TCGA Data PortalGAGE2B 
Broad Tumor PortalGAGE2B
OASIS PortalGAGE2B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGAGE2B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGAGE2B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GAGE2B
DgiDB (Drug Gene Interaction Database)GAGE2B
DoCM (Curated mutations)GAGE2B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GAGE2B (select a term)
intoGenGAGE2B
Cancer3DGAGE2B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300726   
Orphanet
MedgenGAGE2B
Genetic Testing Registry GAGE2B
NextProtQ13066 [Medical]
TSGene645037
GENETestsGAGE2B
Huge Navigator GAGE2B [HugePedia]
snp3D : Map Gene to Disease645037
BioCentury BCIQGAGE2B
ClinGenGAGE2B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD645037
Chemical/Pharm GKB GenePA162389245
Clinical trialGAGE2B
Miscellaneous
canSAR (ICR)GAGE2B (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGAGE2B
EVEXGAGE2B
GoPubMedGAGE2B
iHOPGAGE2B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:05:42 CET 2017

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