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GAGE2C (G antigen 2C)

Identity

Other aliasCT4.2
GAGE-2
GAGE-2C
GAGE2
HGNC (Hugo) GAGE2C
LocusID (NCBI) 2574
Atlas_Id 40670
Location Xp11.23  [Link to chromosome band Xp11]
Location_base_pair Starts at 49589529 and ends at 49596837 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Liver tumors: an overview


External links

Nomenclature
HGNC (Hugo)GAGE2C   31958
Cards
Entrez_Gene (NCBI)GAGE2C  2574  G antigen 2C
AliasesCT4.2; GAGE-2; GAGE-2C; GAGE2
GeneCards (Weizmann)GAGE2C
Ensembl hg19 (Hinxton)ENSG00000274274 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000274274 [Gene_View]  ENSG00000274274 [Sequence]  chrX:49589529-49596837 [Contig_View]  GAGE2C [Vega]
ICGC DataPortalENSG00000274274
TCGA cBioPortalGAGE2C
AceView (NCBI)GAGE2C
Genatlas (Paris)GAGE2C
WikiGenes2574
SOURCE (Princeton)GAGE2C
Genetics Home Reference (NIH)GAGE2C
Genomic and cartography
GoldenPath hg38 (UCSC)GAGE2C  -     chrX:49589529-49596837 +  Xp11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GAGE2C  -     Xp11.23   [Description]    (hg19-Feb_2009)
EnsemblGAGE2C - Xp11.23 [CytoView hg19]  GAGE2C - Xp11.23 [CytoView hg38]
Mapping of homologs : NCBIGAGE2C [Mapview hg19]  GAGE2C [Mapview hg38]
OMIM300595   
Gene and transcription
Genbank (Entrez)BC113926 U19143
RefSeq transcript (Entrez)NM_001472
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GAGE2C
Cluster EST : UnigeneHs.460641 [ NCBI ]
CGAP (NCI)Hs.460641
Alternative Splicing GalleryENSG00000274274
Gene ExpressionGAGE2C [ NCBI-GEO ]   GAGE2C [ EBI - ARRAY_EXPRESS ]   GAGE2C [ SEEK ]   GAGE2C [ MEM ]
Gene Expression Viewer (FireBrowse)GAGE2C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2574
GTEX Portal (Tissue expression)GAGE2C
Human Protein AtlasENSG00000274274-GAGE2C [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13066   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13066  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13066
Splice isoforms : SwissVarQ13066
PhosPhoSitePlusQ13066
Domains : Interpro (EBI)GAGE    GAGE_fam   
Domain families : Pfam (Sanger)GAGE (PF05831)   
Domain families : Pfam (NCBI)pfam05831   
Domain families : Smart (EMBL)GAGE (SM01379)  
Conserved Domain (NCBI)GAGE2C
DMDM Disease mutations2574
Blocks (Seattle)GAGE2C
SuperfamilyQ13066
Human Protein Atlas [tissue]ENSG00000274274-GAGE2C [tissue]
Peptide AtlasQ13066
HPRD05029
IPIIPI00011527   IPI00554527   
Protein Interaction databases
DIP (DOE-UCLA)Q13066
IntAct (EBI)Q13066
FunCoupENSG00000274274
BioGRIDGAGE2C
STRING (EMBL)GAGE2C
ZODIACGAGE2C
Ontologies - Pathways
QuickGOQ13066
Ontology : AmiGOmolecular_function  cellular_component  biological_process  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  
NDEx NetworkGAGE2C
Atlas of Cancer Signalling NetworkGAGE2C
Wikipedia pathwaysGAGE2C
Orthology - Evolution
OrthoDB2574
GeneTree (enSembl)ENSG00000274274
Phylogenetic Trees/Animal Genes : TreeFamGAGE2C
HOVERGENQ13066
HOGENOMQ13066
Homologs : HomoloGeneGAGE2C
Homology/Alignments : Family Browser (UCSC)GAGE2C
Gene fusions - Rearrangements
Fusion : QuiverGAGE2C
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGAGE2C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GAGE2C
dbVarGAGE2C
ClinVarGAGE2C
1000_GenomesGAGE2C 
Exome Variant ServerGAGE2C
ExAC (Exome Aggregation Consortium)ENSG00000274274
GNOMAD BrowserENSG00000274274
Genetic variants : HAPMAP2574
Genomic Variants (DGV)GAGE2C [DGVbeta]
DECIPHERGAGE2C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGAGE2C 
Mutations
ICGC Data PortalGAGE2C 
TCGA Data PortalGAGE2C 
Broad Tumor PortalGAGE2C
OASIS PortalGAGE2C [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDGAGE2C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GAGE2C
DgiDB (Drug Gene Interaction Database)GAGE2C
DoCM (Curated mutations)GAGE2C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GAGE2C (select a term)
intoGenGAGE2C
Cancer3DGAGE2C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300595   
Orphanet
DisGeNETGAGE2C
MedgenGAGE2C
Genetic Testing Registry GAGE2C
NextProtQ13066 [Medical]
TSGene2574
GENETestsGAGE2C
Target ValidationGAGE2C
Huge Navigator GAGE2C [HugePedia]
snp3D : Map Gene to Disease2574
BioCentury BCIQGAGE2C
ClinGenGAGE2C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2574
Chemical/Pharm GKB GenePA162389260
Clinical trialGAGE2C
Miscellaneous
canSAR (ICR)GAGE2C (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGAGE2C
EVEXGAGE2C
GoPubMedGAGE2C
iHOPGAGE2C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Jun 22 16:26:42 CEST 2018

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