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GAGE2D (G antigen 2D)

Identity

Alias_symbol (synonym)GAGE8
Other aliasCT4.8
GAGE-2D
GAGE-8
HGNC (Hugo) GAGE2D
LocusID (NCBI) 729408
Atlas_Id 63674
Location Xp11.23  [Link to chromosome band Xp11]
Location_base_pair Starts at 49331582 and ends at 49338952 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GAGE2D   31959
Cards
Entrez_Gene (NCBI)GAGE2D  729408  G antigen 2D
AliasesCT4.8; GAGE-2D; GAGE-8; GAGE8
GeneCards (Weizmann)GAGE2D
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chrX:49331582-49338952 [Contig_View]  GAGE2D [Vega]
TCGA cBioPortalGAGE2D
AceView (NCBI)GAGE2D
Genatlas (Paris)GAGE2D
WikiGenes729408
SOURCE (Princeton)GAGE2D
Genetics Home Reference (NIH)GAGE2D
Genomic and cartography
GoldenPath hg38 (UCSC)GAGE2D  -     chrX:49331582-49338952 +  Xp11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GAGE2D  -     Xp11.23   [Description]    (hg19-Feb_2009)
EnsemblGAGE2D - Xp11.23 [CytoView hg19]  GAGE2D - Xp11.23 [CytoView hg38]
Mapping of homologs : NCBIGAGE2D [Mapview hg19]  GAGE2D [Mapview hg38]
OMIM300735   
Gene and transcription
Genbank (Entrez)BC018052
RefSeq transcript (Entrez)NM_001098407
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GAGE2D
Cluster EST : UnigeneHs.695912 [ NCBI ]
CGAP (NCI)Hs.695912
Gene ExpressionGAGE2D [ NCBI-GEO ]   GAGE2D [ EBI - ARRAY_EXPRESS ]   GAGE2D [ SEEK ]   GAGE2D [ MEM ]
Gene Expression Viewer (FireBrowse)GAGE2D [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)729408
GTEX Portal (Tissue expression)GAGE2D
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UEU5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UEU5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UEU5
Splice isoforms : SwissVarQ9UEU5
PhosPhoSitePlusQ9UEU5
Domains : Interpro (EBI)GAGE    GAGE_fam   
Domain families : Pfam (Sanger)GAGE (PF05831)   
Domain families : Pfam (NCBI)pfam05831   
Domain families : Smart (EMBL)GAGE (SM01379)  
Conserved Domain (NCBI)GAGE2D
DMDM Disease mutations729408
Blocks (Seattle)GAGE2D
SuperfamilyQ9UEU5
Peptide AtlasQ9UEU5
Protein Interaction databases
DIP (DOE-UCLA)Q9UEU5
IntAct (EBI)Q9UEU5
BioGRIDGAGE2D
STRING (EMBL)GAGE2D
ZODIACGAGE2D
Ontologies - Pathways
QuickGOQ9UEU5
Ontology : AmiGOprotein binding  cellular defense response  
Ontology : EGO-EBIprotein binding  cellular defense response  
NDEx NetworkGAGE2D
Atlas of Cancer Signalling NetworkGAGE2D
Wikipedia pathwaysGAGE2D
Orthology - Evolution
OrthoDB729408
Phylogenetic Trees/Animal Genes : TreeFamGAGE2D
HOVERGENQ9UEU5
HOGENOMQ9UEU5
Homologs : HomoloGeneGAGE2D
Homology/Alignments : Family Browser (UCSC)GAGE2D
Gene fusions - Rearrangements
Tumor Fusion PortalGAGE2D
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGAGE2D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GAGE2D
dbVarGAGE2D
ClinVarGAGE2D
1000_GenomesGAGE2D 
Exome Variant ServerGAGE2D
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP729408
Genomic Variants (DGV)GAGE2D [DGVbeta]
DECIPHERGAGE2D [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGAGE2D 
Mutations
ICGC Data PortalGAGE2D 
TCGA Data PortalGAGE2D 
Broad Tumor PortalGAGE2D
OASIS PortalGAGE2D [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDGAGE2D
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GAGE2D
DgiDB (Drug Gene Interaction Database)GAGE2D
DoCM (Curated mutations)GAGE2D (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GAGE2D (select a term)
intoGenGAGE2D
Cancer3DGAGE2D(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300735   
Orphanet
DisGeNETGAGE2D
MedgenGAGE2D
Genetic Testing Registry GAGE2D
NextProtQ9UEU5 [Medical]
TSGene729408
GENETestsGAGE2D
Target ValidationGAGE2D
Huge Navigator GAGE2D [HugePedia]
snp3D : Map Gene to Disease729408
BioCentury BCIQGAGE2D
ClinGenGAGE2D
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD729408
Chemical/Pharm GKB GenePA162389275
Clinical trialGAGE2D
Miscellaneous
canSAR (ICR)GAGE2D (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGAGE2D
EVEXGAGE2D
GoPubMedGAGE2D
iHOPGAGE2D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 19:30:47 CET 2017

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