Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

GAGE4 (G antigen 4)

Identity

Alias_namesmember 4
Alias_symbol (synonym)CT4.4
Other alias
HGNC (Hugo) GAGE4
LocusID (NCBI) 2576
Atlas_Id 40672
Location Xp11.23  [Link to chromosome band Xp11]
Location_base_pair Starts at 49341182 and ends at 49529981 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Testis: Spermatocytic seminoma

External links

Nomenclature
HGNC (Hugo)GAGE4   4101
Cards
Entrez_Gene (NCBI)GAGE4  2576  G antigen 4
AliasesCT4.4
GeneCards (Weizmann)GAGE4
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chrX:49341182-49529981 [Contig_View]  GAGE4 [Vega]
TCGA cBioPortalGAGE4
AceView (NCBI)GAGE4
Genatlas (Paris)GAGE4
WikiGenes2576
SOURCE (Princeton)GAGE4
Genetics Home Reference (NIH)GAGE4
Genomic and cartography
GoldenPath hg38 (UCSC)GAGE4  -     chrX:49341182-49529981 +  Xp11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GAGE4  -     Xp11.23   [Description]    (hg19-Feb_2009)
EnsemblGAGE4 - Xp11.23 [CytoView hg19]  GAGE4 - Xp11.23 [CytoView hg38]
Mapping of homologs : NCBIGAGE4 [Mapview hg19]  GAGE4 [Mapview hg38]
OMIM300597   
Gene and transcription
Genbank (Entrez)BC171769 CR542236 U19145
RefSeq transcript (Entrez)NM_001474
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GAGE4
Cluster EST : UnigeneHs.722100 [ NCBI ]
CGAP (NCI)Hs.722100
Gene ExpressionGAGE4 [ NCBI-GEO ]   GAGE4 [ EBI - ARRAY_EXPRESS ]   GAGE4 [ SEEK ]   GAGE4 [ MEM ]
Gene Expression Viewer (FireBrowse)GAGE4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2576
GTEX Portal (Tissue expression)GAGE4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13068   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13068  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13068
Splice isoforms : SwissVarQ13068
PhosPhoSitePlusQ13068
Domains : Interpro (EBI)GAGE    GAGE_fam   
Domain families : Pfam (Sanger)GAGE (PF05831)   
Domain families : Pfam (NCBI)pfam05831   
Domain families : Smart (EMBL)GAGE (SM01379)  
Conserved Domain (NCBI)GAGE4
DMDM Disease mutations2576
Blocks (Seattle)GAGE4
SuperfamilyQ13068
Peptide AtlasQ13068
HPRD05031
IPIIPI00829712   
Protein Interaction databases
DIP (DOE-UCLA)Q13068
IntAct (EBI)Q13068
BioGRIDGAGE4
STRING (EMBL)GAGE4
ZODIACGAGE4
Ontologies - Pathways
QuickGOQ13068
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkGAGE4
Atlas of Cancer Signalling NetworkGAGE4
Wikipedia pathwaysGAGE4
Orthology - Evolution
OrthoDB2576
Phylogenetic Trees/Animal Genes : TreeFamGAGE4
HOVERGENQ13068
HOGENOMQ13068
Homologs : HomoloGeneGAGE4
Homology/Alignments : Family Browser (UCSC)GAGE4
Gene fusions - Rearrangements
Fusion : QuiverGAGE4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGAGE4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GAGE4
dbVarGAGE4
ClinVarGAGE4
1000_GenomesGAGE4 
Exome Variant ServerGAGE4
Varsome BrowserGAGE4
Genetic variants : HAPMAP2576
Genomic Variants (DGV)GAGE4 [DGVbeta]
DECIPHERGAGE4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGAGE4 
Mutations
ICGC Data PortalGAGE4 
TCGA Data PortalGAGE4 
Broad Tumor PortalGAGE4
OASIS PortalGAGE4 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDGAGE4
BioMutasearch GAGE4
DgiDB (Drug Gene Interaction Database)GAGE4
DoCM (Curated mutations)GAGE4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GAGE4 (select a term)
intoGenGAGE4
Cancer3DGAGE4(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300597   
Orphanet
DisGeNETGAGE4
MedgenGAGE4
Genetic Testing Registry GAGE4
NextProtQ13068 [Medical]
TSGene2576
GENETestsGAGE4
Target ValidationGAGE4
Huge Navigator GAGE4 [HugePedia]
snp3D : Map Gene to Disease2576
BioCentury BCIQGAGE4
ClinGenGAGE4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2576
Chemical/Pharm GKB GenePA28516
Clinical trialGAGE4
Miscellaneous
canSAR (ICR)GAGE4 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGAGE4
EVEXGAGE4
GoPubMedGAGE4
iHOPGAGE4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Aug 27 11:24:08 CEST 2018
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.