Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

GAGE5 (G antigen 5)

Identity

Alias_namesmember 5
Alias_symbol (synonym)CT4.5
Other alias
HGNC (Hugo) GAGE5
LocusID (NCBI) 2577
Atlas_Id 40673
Location Xp11.23  [Link to chromosome band Xp11]
Location_base_pair Starts at 49341190 and ends at 49529985 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GAGE5   4102
Cards
Entrez_Gene (NCBI)GAGE5  2577  G antigen 5
AliasesCT4.5
GeneCards (Weizmann)GAGE5
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chrX:49341190-49529985 [Contig_View]  GAGE5 [Vega]
TCGA cBioPortalGAGE5
AceView (NCBI)GAGE5
Genatlas (Paris)GAGE5
WikiGenes2577
SOURCE (Princeton)GAGE5
Genetics Home Reference (NIH)GAGE5
Genomic and cartography
GoldenPath hg38 (UCSC)GAGE5  -     chrX:49341190-49529985 +  Xp11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GAGE5  -     Xp11.23   [Description]    (hg19-Feb_2009)
EnsemblGAGE5 - Xp11.23 [CytoView hg19]  GAGE5 - Xp11.23 [CytoView hg38]
Mapping of homologs : NCBIGAGE5 [Mapview hg19]  GAGE5 [Mapview hg38]
OMIM300598   
Gene and transcription
Genbank (Entrez)BC024914 DQ891160 DQ894341 U19146
RefSeq transcript (Entrez)NM_001475
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GAGE5
Cluster EST : UnigeneHs.460641 [ NCBI ]
CGAP (NCI)Hs.460641
Gene ExpressionGAGE5 [ NCBI-GEO ]   GAGE5 [ EBI - ARRAY_EXPRESS ]   GAGE5 [ SEEK ]   GAGE5 [ MEM ]
Gene Expression Viewer (FireBrowse)GAGE5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2577
GTEX Portal (Tissue expression)GAGE5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13069   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13069  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13069
Splice isoforms : SwissVarQ13069
PhosPhoSitePlusQ13069
Domains : Interpro (EBI)GAGE    GAGE_fam   
Domain families : Pfam (Sanger)GAGE (PF05831)   
Domain families : Pfam (NCBI)pfam05831   
Domain families : Smart (EMBL)GAGE (SM01379)  
Conserved Domain (NCBI)GAGE5
DMDM Disease mutations2577
Blocks (Seattle)GAGE5
SuperfamilyQ13069
Peptide AtlasQ13069
HPRD05032
IPIIPI00011531   
Protein Interaction databases
DIP (DOE-UCLA)Q13069
IntAct (EBI)Q13069
BioGRIDGAGE5
STRING (EMBL)GAGE5
ZODIACGAGE5
Ontologies - Pathways
QuickGOQ13069
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkGAGE5
Atlas of Cancer Signalling NetworkGAGE5
Wikipedia pathwaysGAGE5
Orthology - Evolution
OrthoDB2577
Phylogenetic Trees/Animal Genes : TreeFamGAGE5
HOVERGENQ13069
HOGENOMQ13069
Homologs : HomoloGeneGAGE5
Homology/Alignments : Family Browser (UCSC)GAGE5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGAGE5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GAGE5
dbVarGAGE5
ClinVarGAGE5
1000_GenomesGAGE5 
Exome Variant ServerGAGE5
ExAC (Exome Aggregation Consortium)GAGE5 (select the gene name)
Genetic variants : HAPMAP2577
Genomic Variants (DGV)GAGE5 [DGVbeta]
DECIPHERGAGE5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGAGE5 
Mutations
ICGC Data PortalGAGE5 
TCGA Data PortalGAGE5 
Broad Tumor PortalGAGE5
OASIS PortalGAGE5 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDGAGE5
BioMutasearch GAGE5
DgiDB (Drug Gene Interaction Database)GAGE5
DoCM (Curated mutations)GAGE5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GAGE5 (select a term)
intoGenGAGE5
Cancer3DGAGE5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300598   
Orphanet
MedgenGAGE5
Genetic Testing Registry GAGE5
NextProtQ13069 [Medical]
TSGene2577
GENETestsGAGE5
Target ValidationGAGE5
Huge Navigator GAGE5 [HugePedia]
snp3D : Map Gene to Disease2577
BioCentury BCIQGAGE5
ClinGenGAGE5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2577
Chemical/Pharm GKB GenePA28517
Clinical trialGAGE5
Miscellaneous
canSAR (ICR)GAGE5 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGAGE5
EVEXGAGE5
GoPubMedGAGE5
iHOPGAGE5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 17:01:44 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.