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GAGE6 (G antigen 6)

Identity

Alias_namesmember 6
Alias_symbol (synonym)CT4.6
Other alias
HGNC (Hugo) GAGE6
LocusID (NCBI) 2578
Atlas_Id 40674
Location Xp11.23  [Link to chromosome band Xp11]
Location_base_pair Starts at 49325480 and ends at 49332807 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GAGE6   4103
Cards
Entrez_Gene (NCBI)GAGE6  2578  G antigen 6
AliasesCT4.6
GeneCards (Weizmann)GAGE6
Ensembl hg19 (Hinxton) [Gene_View]  chrX:49325480-49332807 [Contig_View]  GAGE6 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chrX:49325480-49332807 [Contig_View]  GAGE6 [Vega]
TCGA cBioPortalGAGE6
AceView (NCBI)GAGE6
Genatlas (Paris)GAGE6
WikiGenes2578
SOURCE (Princeton)GAGE6
Genetics Home Reference (NIH)GAGE6
Genomic and cartography
GoldenPath hg19 (UCSC)GAGE6  -     chrX:49325480-49332807 +  Xp11.23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GAGE6  -     Xp11.23   [Description]    (hg38-Dec_2013)
EnsemblGAGE6 - Xp11.23 [CytoView hg19]  GAGE6 - Xp11.23 [CytoView hg38]
Mapping of homologs : NCBIGAGE6 [Mapview hg19]  GAGE6 [Mapview hg38]
OMIM300599   
Gene and transcription
Genbank (Entrez)BC148435 U19147
RefSeq transcript (Entrez)NM_001476
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GAGE6
Cluster EST : UnigeneHs.632808 [ NCBI ]
CGAP (NCI)Hs.632808
Gene ExpressionGAGE6 [ NCBI-GEO ]   GAGE6 [ EBI - ARRAY_EXPRESS ]   GAGE6 [ SEEK ]   GAGE6 [ MEM ]
Gene Expression Viewer (FireBrowse)GAGE6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2578
GTEX Portal (Tissue expression)GAGE6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13070   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13070  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13070
Splice isoforms : SwissVarQ13070
PhosPhoSitePlusQ13070
Domains : Interpro (EBI)GAGE    GAGE_fam   
Domain families : Pfam (Sanger)GAGE (PF05831)   
Domain families : Pfam (NCBI)pfam05831   
Conserved Domain (NCBI)GAGE6
DMDM Disease mutations2578
Blocks (Seattle)GAGE6
SuperfamilyQ13070
Peptide AtlasQ13070
HPRD05033
IPIIPI00011545   
Protein Interaction databases
DIP (DOE-UCLA)Q13070
IntAct (EBI)Q13070
BioGRIDGAGE6
STRING (EMBL)GAGE6
ZODIACGAGE6
Ontologies - Pathways
QuickGOQ13070
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkGAGE6
Atlas of Cancer Signalling NetworkGAGE6
Wikipedia pathwaysGAGE6
Orthology - Evolution
OrthoDB2578
Phylogenetic Trees/Animal Genes : TreeFamGAGE6
HOVERGENQ13070
HOGENOMQ13070
Homologs : HomoloGeneGAGE6
Homology/Alignments : Family Browser (UCSC)GAGE6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGAGE6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GAGE6
dbVarGAGE6
ClinVarGAGE6
1000_GenomesGAGE6 
Exome Variant ServerGAGE6
ExAC (Exome Aggregation Consortium)GAGE6 (select the gene name)
Genetic variants : HAPMAP2578
Genomic Variants (DGV)GAGE6 [DGVbeta]
DECIPHER (Syndromes)X:49325480-49332807  
CONAN: Copy Number AnalysisGAGE6 
Mutations
ICGC Data PortalGAGE6 
TCGA Data PortalGAGE6 
Broad Tumor PortalGAGE6
OASIS PortalGAGE6 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDGAGE6
BioMutasearch GAGE6
DgiDB (Drug Gene Interaction Database)GAGE6
DoCM (Curated mutations)GAGE6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GAGE6 (select a term)
intoGenGAGE6
Cancer3DGAGE6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300599   
Orphanet
MedgenGAGE6
Genetic Testing Registry GAGE6
NextProtQ13070 [Medical]
TSGene2578
GENETestsGAGE6
Huge Navigator GAGE6 [HugePedia]
snp3D : Map Gene to Disease2578
BioCentury BCIQGAGE6
ClinGenGAGE6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2578
Chemical/Pharm GKB GenePA28518
Clinical trialGAGE6
Miscellaneous
canSAR (ICR)GAGE6 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGAGE6
EVEXGAGE6
GoPubMedGAGE6
iHOPGAGE6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:01:59 CEST 2017

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