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GAL3ST1 (galactose-3-O-sulfotransferase 1)

Identity

Alias_symbol (synonym)CST
Other alias
HGNC (Hugo) GAL3ST1
LocusID (NCBI) 9514
Atlas_Id 40682
Location 22q12.2  [Link to chromosome band 22q12]
Location_base_pair Starts at 30554635 and ends at 30574587 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GAL3ST1   24240
Cards
Entrez_Gene (NCBI)GAL3ST1  9514  galactose-3-O-sulfotransferase 1
AliasesCST
GeneCards (Weizmann)GAL3ST1
Ensembl hg19 (Hinxton)ENSG00000128242 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000128242 [Gene_View]  chr22:30554635-30574587 [Contig_View]  GAL3ST1 [Vega]
ICGC DataPortalENSG00000128242
TCGA cBioPortalGAL3ST1
AceView (NCBI)GAL3ST1
Genatlas (Paris)GAL3ST1
WikiGenes9514
SOURCE (Princeton)GAL3ST1
Genetics Home Reference (NIH)GAL3ST1
Genomic and cartography
GoldenPath hg38 (UCSC)GAL3ST1  -     chr22:30554635-30574587 -  22q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GAL3ST1  -     22q12.2   [Description]    (hg19-Feb_2009)
EnsemblGAL3ST1 - 22q12.2 [CytoView hg19]  GAL3ST1 - 22q12.2 [CytoView hg38]
Mapping of homologs : NCBIGAL3ST1 [Mapview hg19]  GAL3ST1 [Mapview hg38]
OMIM602300   
Gene and transcription
Genbank (Entrez)AK313097 AW137588 BC014649 BC019077 BG419785
RefSeq transcript (Entrez)NM_001318103 NM_001318104 NM_001318105 NM_001318106 NM_001318107 NM_001318108 NM_001318109 NM_001318110 NM_001318111 NM_001318112 NM_001318113 NM_001318114 NM_001318115 NM_001318116 NM_004861
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GAL3ST1
Cluster EST : UnigeneHs.17958 [ NCBI ]
CGAP (NCI)Hs.17958
Alternative Splicing GalleryENSG00000128242
Gene ExpressionGAL3ST1 [ NCBI-GEO ]   GAL3ST1 [ EBI - ARRAY_EXPRESS ]   GAL3ST1 [ SEEK ]   GAL3ST1 [ MEM ]
Gene Expression Viewer (FireBrowse)GAL3ST1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9514
GTEX Portal (Tissue expression)GAL3ST1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99999   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99999  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99999
Splice isoforms : SwissVarQ99999
Catalytic activity : Enzyme2.8.2.11 [ Enzyme-Expasy ]   2.8.2.112.8.2.11 [ IntEnz-EBI ]   2.8.2.11 [ BRENDA ]   2.8.2.11 [ KEGG ]   
PhosPhoSitePlusQ99999
Domains : Interpro (EBI)Gal-3-0_sulfotransfrase    P-loop_NTPase   
Domain families : Pfam (Sanger)Gal-3-0_sulfotr (PF06990)   
Domain families : Pfam (NCBI)pfam06990   
Conserved Domain (NCBI)GAL3ST1
DMDM Disease mutations9514
Blocks (Seattle)GAL3ST1
SuperfamilyQ99999
Human Protein AtlasENSG00000128242
Peptide AtlasQ99999
HPRD03806
IPIIPI00006817   IPI00892897   IPI00892545   IPI00894273   IPI00894138   IPI00894521   IPI00894410   IPI00893754   IPI00893612   IPI00893996   IPI00893852   IPI00893843   IPI00893192   IPI00893058   IPI00893427   IPI00893287   IPI00892662   
Protein Interaction databases
DIP (DOE-UCLA)Q99999
IntAct (EBI)Q99999
FunCoupENSG00000128242
BioGRIDGAL3ST1
STRING (EMBL)GAL3ST1
ZODIACGAL3ST1
Ontologies - Pathways
QuickGOQ99999
Ontology : AmiGOGolgi membrane  galactosylceramide sulfotransferase activity  integral component of plasma membrane  protein N-linked glycosylation  galactosylceramide biosynthetic process  spermatogenesis  sulfotransferase activity  membrane  myelination  
Ontology : EGO-EBIGolgi membrane  galactosylceramide sulfotransferase activity  integral component of plasma membrane  protein N-linked glycosylation  galactosylceramide biosynthetic process  spermatogenesis  sulfotransferase activity  membrane  myelination  
Pathways : KEGGSphingolipid metabolism   
NDEx NetworkGAL3ST1
Atlas of Cancer Signalling NetworkGAL3ST1
Wikipedia pathwaysGAL3ST1
Orthology - Evolution
OrthoDB9514
GeneTree (enSembl)ENSG00000128242
Phylogenetic Trees/Animal Genes : TreeFamGAL3ST1
HOVERGENQ99999
HOGENOMQ99999
Homologs : HomoloGeneGAL3ST1
Homology/Alignments : Family Browser (UCSC)GAL3ST1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGAL3ST1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GAL3ST1
dbVarGAL3ST1
ClinVarGAL3ST1
1000_GenomesGAL3ST1 
Exome Variant ServerGAL3ST1
ExAC (Exome Aggregation Consortium)GAL3ST1 (select the gene name)
Genetic variants : HAPMAP9514
Genomic Variants (DGV)GAL3ST1 [DGVbeta]
DECIPHERGAL3ST1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGAL3ST1 
Mutations
ICGC Data PortalGAL3ST1 
TCGA Data PortalGAL3ST1 
Broad Tumor PortalGAL3ST1
OASIS PortalGAL3ST1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGAL3ST1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGAL3ST1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GAL3ST1
DgiDB (Drug Gene Interaction Database)GAL3ST1
DoCM (Curated mutations)GAL3ST1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GAL3ST1 (select a term)
intoGenGAL3ST1
Cancer3DGAL3ST1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602300   
Orphanet
MedgenGAL3ST1
Genetic Testing Registry GAL3ST1
NextProtQ99999 [Medical]
TSGene9514
GENETestsGAL3ST1
Target ValidationGAL3ST1
Huge Navigator GAL3ST1 [HugePedia]
snp3D : Map Gene to Disease9514
BioCentury BCIQGAL3ST1
ClinGenGAL3ST1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9514
Chemical/Pharm GKB GenePA134889661
Clinical trialGAL3ST1
Miscellaneous
canSAR (ICR)GAL3ST1 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGAL3ST1
EVEXGAL3ST1
GoPubMedGAL3ST1
iHOPGAL3ST1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:34:47 CEST 2017

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