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GAL3ST3 (galactose-3-O-sulfotransferase 3)

Identity

Alias_symbol (synonym)GAL3ST2
Other aliasGAL3ST-3
HGNC (Hugo) GAL3ST3
LocusID (NCBI) 89792
Atlas_Id 63677
Location 11q13.1  [Link to chromosome band 11q13]
Location_base_pair Starts at 65808236 and ends at 65816651 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GAL3ST3   24144
Cards
Entrez_Gene (NCBI)GAL3ST3  89792  galactose-3-O-sulfotransferase 3
AliasesGAL3ST-3; GAL3ST2
GeneCards (Weizmann)GAL3ST3
Ensembl hg19 (Hinxton) [Gene_View]  chr11:65808236-65816651 [Contig_View]  GAL3ST3 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr11:65808236-65816651 [Contig_View]  GAL3ST3 [Vega]
TCGA cBioPortalGAL3ST3
AceView (NCBI)GAL3ST3
Genatlas (Paris)GAL3ST3
WikiGenes89792
SOURCE (Princeton)GAL3ST3
Genetics Home Reference (NIH)GAL3ST3
Genomic and cartography
GoldenPath hg19 (UCSC)GAL3ST3  -     chr11:65808236-65816651 -  11q13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GAL3ST3  -     11q13.1   [Description]    (hg38-Dec_2013)
EnsemblGAL3ST3 - 11q13.1 [CytoView hg19]  GAL3ST3 - 11q13.1 [CytoView hg38]
Mapping of homologs : NCBIGAL3ST3 [Mapview hg19]  GAL3ST3 [Mapview hg38]
OMIM608234   
Gene and transcription
Genbank (Entrez)AB053232 AY026481 BC113552 BC113554 BM673570
RefSeq transcript (Entrez)NM_033036
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_167190 NW_004929380
Consensus coding sequences : CCDS (NCBI)GAL3ST3
Cluster EST : UnigeneHs.208343 [ NCBI ]
CGAP (NCI)Hs.208343
Gene ExpressionGAL3ST3 [ NCBI-GEO ]   GAL3ST3 [ EBI - ARRAY_EXPRESS ]   GAL3ST3 [ SEEK ]   GAL3ST3 [ MEM ]
Gene Expression Viewer (FireBrowse)GAL3ST3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)89792
GTEX Portal (Tissue expression)GAL3ST3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96A11   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96A11  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96A11
Splice isoforms : SwissVarQ96A11
Catalytic activity : Enzyme2.8.2.- [ Enzyme-Expasy ]   2.8.2.-2.8.2.- [ IntEnz-EBI ]   2.8.2.- [ BRENDA ]   2.8.2.- [ KEGG ]   
PhosPhoSitePlusQ96A11
Domains : Interpro (EBI)Gal-3-0_sulfotransfrase    P-loop_NTPase   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)GAL3ST3
DMDM Disease mutations89792
Blocks (Seattle)GAL3ST3
SuperfamilyQ96A11
Peptide AtlasQ96A11
HPRD10501
IPIIPI00059164   
Protein Interaction databases
DIP (DOE-UCLA)Q96A11
IntAct (EBI)Q96A11
BioGRIDGAL3ST3
STRING (EMBL)GAL3ST3
ZODIACGAL3ST3
Ontologies - Pathways
QuickGOQ96A11
Ontology : AmiGOgalactosylceramide sulfotransferase activity  monosaccharide metabolic process  sulfur compound metabolic process  oligosaccharide metabolic process  integral component of membrane  proteoglycan biosynthetic process  carbohydrate binding  poly-N-acetyllactosamine metabolic process  Golgi cisterna membrane  3'-phosphoadenosine 5'-phosphosulfate binding  galactose 3-O-sulfotransferase activity  galactose 3-O-sulfotransferase activity  proteoglycan sulfotransferase activity  
Ontology : EGO-EBIgalactosylceramide sulfotransferase activity  monosaccharide metabolic process  sulfur compound metabolic process  oligosaccharide metabolic process  integral component of membrane  proteoglycan biosynthetic process  carbohydrate binding  poly-N-acetyllactosamine metabolic process  Golgi cisterna membrane  3'-phosphoadenosine 5'-phosphosulfate binding  galactose 3-O-sulfotransferase activity  galactose 3-O-sulfotransferase activity  proteoglycan sulfotransferase activity  
NDEx NetworkGAL3ST3
Atlas of Cancer Signalling NetworkGAL3ST3
Wikipedia pathwaysGAL3ST3
Orthology - Evolution
OrthoDB89792
Phylogenetic Trees/Animal Genes : TreeFamGAL3ST3
HOVERGENQ96A11
HOGENOMQ96A11
Homologs : HomoloGeneGAL3ST3
Homology/Alignments : Family Browser (UCSC)GAL3ST3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGAL3ST3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GAL3ST3
dbVarGAL3ST3
ClinVarGAL3ST3
1000_GenomesGAL3ST3 
Exome Variant ServerGAL3ST3
ExAC (Exome Aggregation Consortium)GAL3ST3 (select the gene name)
Genetic variants : HAPMAP89792
Genomic Variants (DGV)GAL3ST3 [DGVbeta]
DECIPHER (Syndromes)11:65808236-65816651  
CONAN: Copy Number AnalysisGAL3ST3 
Mutations
ICGC Data PortalGAL3ST3 
TCGA Data PortalGAL3ST3 
Broad Tumor PortalGAL3ST3
OASIS PortalGAL3ST3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGAL3ST3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGAL3ST3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GAL3ST3
DgiDB (Drug Gene Interaction Database)GAL3ST3
DoCM (Curated mutations)GAL3ST3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GAL3ST3 (select a term)
intoGenGAL3ST3
Cancer3DGAL3ST3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608234   
Orphanet
MedgenGAL3ST3
Genetic Testing Registry GAL3ST3
NextProtQ96A11 [Medical]
TSGene89792
GENETestsGAL3ST3
Huge Navigator GAL3ST3 [HugePedia]
snp3D : Map Gene to Disease89792
BioCentury BCIQGAL3ST3
ClinGenGAL3ST3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD89792
Chemical/Pharm GKB GenePA134864180
Clinical trialGAL3ST3
Miscellaneous
canSAR (ICR)GAL3ST3 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGAL3ST3
EVEXGAL3ST3
GoPubMedGAL3ST3
iHOPGAL3ST3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:05:43 CET 2017

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