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GAL3ST4 (galactose-3-O-sulfotransferase 4)

Identity

Alias_symbol (synonym)FLJ12116
Other aliasGAL3ST-4
HGNC (Hugo) GAL3ST4
LocusID (NCBI) 79690
Atlas_Id 63678
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 100159242 and ends at 100168750 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GAL3ST4   24145
Cards
Entrez_Gene (NCBI)GAL3ST4  79690  galactose-3-O-sulfotransferase 4
AliasesGAL3ST-4
GeneCards (Weizmann)GAL3ST4
Ensembl hg19 (Hinxton)ENSG00000197093 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197093 [Gene_View]  chr7:100159242-100168750 [Contig_View]  GAL3ST4 [Vega]
ICGC DataPortalENSG00000197093
TCGA cBioPortalGAL3ST4
AceView (NCBI)GAL3ST4
Genatlas (Paris)GAL3ST4
WikiGenes79690
SOURCE (Princeton)GAL3ST4
Genetics Home Reference (NIH)GAL3ST4
Genomic and cartography
GoldenPath hg38 (UCSC)GAL3ST4  -     chr7:100159242-100168750 -  7q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GAL3ST4  -     7q22.1   [Description]    (hg19-Feb_2009)
EnsemblGAL3ST4 - 7q22.1 [CytoView hg19]  GAL3ST4 - 7q22.1 [CytoView hg38]
Mapping of homologs : NCBIGAL3ST4 [Mapview hg19]  GAL3ST4 [Mapview hg38]
OMIM608235   
Gene and transcription
Genbank (Entrez)AF289575 AF316113 AK022178 AK092367 AK225890
RefSeq transcript (Entrez)NM_024637
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GAL3ST4
Cluster EST : UnigeneHs.44856 [ NCBI ]
CGAP (NCI)Hs.44856
Alternative Splicing GalleryENSG00000197093
Gene ExpressionGAL3ST4 [ NCBI-GEO ]   GAL3ST4 [ EBI - ARRAY_EXPRESS ]   GAL3ST4 [ SEEK ]   GAL3ST4 [ MEM ]
Gene Expression Viewer (FireBrowse)GAL3ST4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79690
GTEX Portal (Tissue expression)GAL3ST4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96RP7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96RP7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96RP7
Splice isoforms : SwissVarQ96RP7
Catalytic activity : Enzyme2.8.2.- [ Enzyme-Expasy ]   2.8.2.-2.8.2.- [ IntEnz-EBI ]   2.8.2.- [ BRENDA ]   2.8.2.- [ KEGG ]   
PhosPhoSitePlusQ96RP7
Domains : Interpro (EBI)Gal-3-0_sulfotransfrase    P-loop_NTPase   
Domain families : Pfam (Sanger)Gal-3-0_sulfotr (PF06990)   
Domain families : Pfam (NCBI)pfam06990   
Conserved Domain (NCBI)GAL3ST4
DMDM Disease mutations79690
Blocks (Seattle)GAL3ST4
SuperfamilyQ96RP7
Human Protein AtlasENSG00000197093
Peptide AtlasQ96RP7
HPRD12195
IPIIPI00411637   IPI00911089   IPI00925529   
Protein Interaction databases
DIP (DOE-UCLA)Q96RP7
IntAct (EBI)Q96RP7
FunCoupENSG00000197093
BioGRIDGAL3ST4
STRING (EMBL)GAL3ST4
ZODIACGAL3ST4
Ontologies - Pathways
QuickGOQ96RP7
Ontology : AmiGOgalactosylceramide sulfotransferase activity  sulfur compound metabolic process  cell-cell signaling  glycoprotein metabolic process  glycolipid biosynthetic process  oligosaccharide metabolic process  membrane  integral component of membrane  proteoglycan biosynthetic process  Golgi cisterna membrane  3'-phosphoadenosine 5'-phosphosulfate binding  galactose 3-O-sulfotransferase activity  proteoglycan sulfotransferase activity  extracellular exosome  
Ontology : EGO-EBIgalactosylceramide sulfotransferase activity  sulfur compound metabolic process  cell-cell signaling  glycoprotein metabolic process  glycolipid biosynthetic process  oligosaccharide metabolic process  membrane  integral component of membrane  proteoglycan biosynthetic process  Golgi cisterna membrane  3'-phosphoadenosine 5'-phosphosulfate binding  galactose 3-O-sulfotransferase activity  proteoglycan sulfotransferase activity  extracellular exosome  
NDEx NetworkGAL3ST4
Atlas of Cancer Signalling NetworkGAL3ST4
Wikipedia pathwaysGAL3ST4
Orthology - Evolution
OrthoDB79690
GeneTree (enSembl)ENSG00000197093
Phylogenetic Trees/Animal Genes : TreeFamGAL3ST4
HOVERGENQ96RP7
HOGENOMQ96RP7
Homologs : HomoloGeneGAL3ST4
Homology/Alignments : Family Browser (UCSC)GAL3ST4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGAL3ST4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GAL3ST4
dbVarGAL3ST4
ClinVarGAL3ST4
1000_GenomesGAL3ST4 
Exome Variant ServerGAL3ST4
ExAC (Exome Aggregation Consortium)GAL3ST4 (select the gene name)
Genetic variants : HAPMAP79690
Genomic Variants (DGV)GAL3ST4 [DGVbeta]
DECIPHERGAL3ST4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGAL3ST4 
Mutations
ICGC Data PortalGAL3ST4 
TCGA Data PortalGAL3ST4 
Broad Tumor PortalGAL3ST4
OASIS PortalGAL3ST4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGAL3ST4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGAL3ST4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GAL3ST4
DgiDB (Drug Gene Interaction Database)GAL3ST4
DoCM (Curated mutations)GAL3ST4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GAL3ST4 (select a term)
intoGenGAL3ST4
Cancer3DGAL3ST4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608235   
Orphanet
MedgenGAL3ST4
Genetic Testing Registry GAL3ST4
NextProtQ96RP7 [Medical]
TSGene79690
GENETestsGAL3ST4
Target ValidationGAL3ST4
Huge Navigator GAL3ST4 [HugePedia]
snp3D : Map Gene to Disease79690
BioCentury BCIQGAL3ST4
ClinGenGAL3ST4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79690
Chemical/Pharm GKB GenePA134921067
Clinical trialGAL3ST4
Miscellaneous
canSAR (ICR)GAL3ST4 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGAL3ST4
EVEXGAL3ST4
GoPubMedGAL3ST4
iHOPGAL3ST4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:09:08 CEST 2017

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