Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

GALNT10 (polypeptide N-acetylgalactosaminyltransferase 10)

Identity

Alias_namesUDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10 (GalNAc-T10)
Alias_symbol (synonym)GalNAc-T10
Other aliasGALNACT10
PPGALNACT10
PPGANTASE10
HGNC (Hugo) GALNT10
LocusID (NCBI) 55568
Atlas_Id 55188
Location 5q33.2  [Link to chromosome band 5q33]
Location_base_pair Starts at 154190735 and ends at 154420983 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GALNT10 (5q33.2) / FAXDC2 (5q33.2)GALNT10 (5q33.2) / GABRB2 (5q34)GALNT10 (5q33.2) / GALNT10 (5q33.2)
GALNT10 (5q33.2) / IQCA1 (2q37.2)GALNT10 (5q33.2) / MYH9 (22q12.3)GALNT10 5q33.2 C5orf4
GALNT10 5q33.2 / IQCA1 2q37.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GALNT10   19873
Cards
Entrez_Gene (NCBI)GALNT10  55568  polypeptide N-acetylgalactosaminyltransferase 10
AliasesGALNACT10; PPGALNACT10; PPGANTASE10
GeneCards (Weizmann)GALNT10
Ensembl hg19 (Hinxton)ENSG00000164574 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164574 [Gene_View]  chr5:154190735-154420983 [Contig_View]  GALNT10 [Vega]
ICGC DataPortalENSG00000164574
TCGA cBioPortalGALNT10
AceView (NCBI)GALNT10
Genatlas (Paris)GALNT10
WikiGenes55568
SOURCE (Princeton)GALNT10
Genetics Home Reference (NIH)GALNT10
Genomic and cartography
GoldenPath hg38 (UCSC)GALNT10  -     chr5:154190735-154420983 +  5q33.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GALNT10  -     5q33.2   [Description]    (hg19-Feb_2009)
EnsemblGALNT10 - 5q33.2 [CytoView hg19]  GALNT10 - 5q33.2 [CytoView hg38]
Mapping of homologs : NCBIGALNT10 [Mapview hg19]  GALNT10 [Mapview hg38]
OMIM608043   
Gene and transcription
Genbank (Entrez)AB078145 AF086521 AJ505950 AK023782 AK023815
RefSeq transcript (Entrez)NM_017540 NM_024564 NM_198321
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GALNT10
Cluster EST : UnigeneHs.631797 [ NCBI ]
CGAP (NCI)Hs.631797
Alternative Splicing GalleryENSG00000164574
Gene ExpressionGALNT10 [ NCBI-GEO ]   GALNT10 [ EBI - ARRAY_EXPRESS ]   GALNT10 [ SEEK ]   GALNT10 [ MEM ]
Gene Expression Viewer (FireBrowse)GALNT10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55568
GTEX Portal (Tissue expression)GALNT10
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86SR1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86SR1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86SR1
Splice isoforms : SwissVarQ86SR1
Catalytic activity : Enzyme2.4.1.41 [ Enzyme-Expasy ]   2.4.1.412.4.1.41 [ IntEnz-EBI ]   2.4.1.41 [ BRENDA ]   2.4.1.41 [ KEGG ]   
PhosPhoSitePlusQ86SR1
Domaine pattern : Prosite (Expaxy)RICIN_B_LECTIN (PS50231)   
Domains : Interpro (EBI)Glyco_trans_2-like    Nucleotide-diphossugar_trans    Ricin_B_lectin   
Domain families : Pfam (Sanger)Glycos_transf_2 (PF00535)    Ricin_B_lectin (PF00652)   
Domain families : Pfam (NCBI)pfam00535    pfam00652   
Domain families : Smart (EMBL)RICIN (SM00458)  
Conserved Domain (NCBI)GALNT10
DMDM Disease mutations55568
Blocks (Seattle)GALNT10
PDB (SRS)2D7I    2D7R   
PDB (PDBSum)2D7I    2D7R   
PDB (IMB)2D7I    2D7R   
PDB (RSDB)2D7I    2D7R   
Structural Biology KnowledgeBase2D7I    2D7R   
SCOP (Structural Classification of Proteins)2D7I    2D7R   
CATH (Classification of proteins structures)2D7I    2D7R   
SuperfamilyQ86SR1
Human Protein AtlasENSG00000164574
Peptide AtlasQ86SR1
HPRD12157
IPIIPI00375205   IPI00456478   IPI00456479   IPI00303783   IPI00953317   IPI00975915   
Protein Interaction databases
DIP (DOE-UCLA)Q86SR1
IntAct (EBI)Q86SR1
FunCoupENSG00000164574
BioGRIDGALNT10
STRING (EMBL)GALNT10
ZODIACGALNT10
Ontologies - Pathways
QuickGOQ86SR1
Ontology : AmiGOGolgi membrane  polypeptide N-acetylgalactosaminyltransferase activity  polypeptide N-acetylgalactosaminyltransferase activity  protein O-linked glycosylation  integral component of membrane  O-glycan processing  O-glycan processing  carbohydrate binding  metal ion binding  
Ontology : EGO-EBIGolgi membrane  polypeptide N-acetylgalactosaminyltransferase activity  polypeptide N-acetylgalactosaminyltransferase activity  protein O-linked glycosylation  integral component of membrane  O-glycan processing  O-glycan processing  carbohydrate binding  metal ion binding  
Pathways : KEGGMucin type O-Glycan biosynthesis   
NDEx NetworkGALNT10
Atlas of Cancer Signalling NetworkGALNT10
Wikipedia pathwaysGALNT10
Orthology - Evolution
OrthoDB55568
GeneTree (enSembl)ENSG00000164574
Phylogenetic Trees/Animal Genes : TreeFamGALNT10
HOVERGENQ86SR1
HOGENOMQ86SR1
Homologs : HomoloGeneGALNT10
Homology/Alignments : Family Browser (UCSC)GALNT10
Gene fusions - Rearrangements
Fusion : MitelmanGALNT10/FAXDC2 [5q33.2/5q33.2]  
Fusion : MitelmanGALNT10/IQCA1 [5q33.2/2q37.2]  [t(2;5)(q37;q33)]  
Fusion: TCGAGALNT10 5q33.2 C5orf4 BRCA
Fusion: TCGAGALNT10 5q33.2 IQCA1 2q37.2 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGALNT10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GALNT10
dbVarGALNT10
ClinVarGALNT10
1000_GenomesGALNT10 
Exome Variant ServerGALNT10
ExAC (Exome Aggregation Consortium)GALNT10 (select the gene name)
Genetic variants : HAPMAP55568
Genomic Variants (DGV)GALNT10 [DGVbeta]
DECIPHERGALNT10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGALNT10 
Mutations
ICGC Data PortalGALNT10 
TCGA Data PortalGALNT10 
Broad Tumor PortalGALNT10
OASIS PortalGALNT10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGALNT10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGALNT10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GALNT10
DgiDB (Drug Gene Interaction Database)GALNT10
DoCM (Curated mutations)GALNT10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GALNT10 (select a term)
intoGenGALNT10
Cancer3DGALNT10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608043   
Orphanet
MedgenGALNT10
Genetic Testing Registry GALNT10
NextProtQ86SR1 [Medical]
TSGene55568
GENETestsGALNT10
Target ValidationGALNT10
Huge Navigator GALNT10 [HugePedia]
snp3D : Map Gene to Disease55568
BioCentury BCIQGALNT10
ClinGenGALNT10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55568
Chemical/Pharm GKB GenePA134870832
Clinical trialGALNT10
Miscellaneous
canSAR (ICR)GALNT10 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGALNT10
EVEXGALNT10
GoPubMedGALNT10
iHOPGALNT10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:34:48 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.