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GALNT11 (polypeptide N-acetylgalactosaminyltransferase 11)

Identity

Alias_namesUDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11 (GalNAc-T11)
Alias_symbol (synonym)GalNAc-T11
Other aliasGALNAC-T11
GALNACT11
HGNC (Hugo) GALNT11
LocusID (NCBI) 63917
Atlas_Id 63683
Location 7q36.1  [Link to chromosome band 7q36]
Location_base_pair Starts at 152025674 and ends at 152122347 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GALNT11 (7q36.1) / DPP6 (7q36.2)GALNT11 (7q36.1) / EZH2 (7q36.1)GALNT11 (7q36.1) / FKBP3 (14q21.2)
GALNT11 (7q36.1) / GALNT11 (7q36.1)GALNT11 (7q36.1) / LMBR1 (7q36.3)GALNT11 (7q36.1) / PRKAG2 (7q36.1)
KIF1B (1p36.22) / GALNT11 (7q36.1)PTPRN2 (7q36.3) / GALNT11 (7q36.1)GALNT11 PRKAG2
GALNT11 FKBP3GALNT11 EZH2GALNT11 LMBR1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GALNT11   19875
Cards
Entrez_Gene (NCBI)GALNT11  63917  polypeptide N-acetylgalactosaminyltransferase 11
AliasesGALNAC-T11; GALNACT11
GeneCards (Weizmann)GALNT11
Ensembl hg19 (Hinxton)ENSG00000178234 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000178234 [Gene_View]  chr7:152025674-152122347 [Contig_View]  GALNT11 [Vega]
ICGC DataPortalENSG00000178234
TCGA cBioPortalGALNT11
AceView (NCBI)GALNT11
Genatlas (Paris)GALNT11
WikiGenes63917
SOURCE (Princeton)GALNT11
Genetics Home Reference (NIH)GALNT11
Genomic and cartography
GoldenPath hg38 (UCSC)GALNT11  -     chr7:152025674-152122347 +  7q36.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GALNT11  -     7q36.1   [Description]    (hg19-Feb_2009)
EnsemblGALNT11 - 7q36.1 [CytoView hg19]  GALNT11 - 7q36.1 [CytoView hg38]
Mapping of homologs : NCBIGALNT11 [Mapview hg19]  GALNT11 [Mapview hg38]
OMIM615130   
Gene and transcription
Genbank (Entrez)AK025287 AK026056 AK124934 AK128545 AK296097
RefSeq transcript (Entrez)NM_001304514 NM_022087
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GALNT11
Cluster EST : UnigeneHs.647109 [ NCBI ]
CGAP (NCI)Hs.647109
Alternative Splicing GalleryENSG00000178234
Gene ExpressionGALNT11 [ NCBI-GEO ]   GALNT11 [ EBI - ARRAY_EXPRESS ]   GALNT11 [ SEEK ]   GALNT11 [ MEM ]
Gene Expression Viewer (FireBrowse)GALNT11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)63917
GTEX Portal (Tissue expression)GALNT11
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NCW6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NCW6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NCW6
Splice isoforms : SwissVarQ8NCW6
Catalytic activity : Enzyme2.4.1.41 [ Enzyme-Expasy ]   2.4.1.412.4.1.41 [ IntEnz-EBI ]   2.4.1.41 [ BRENDA ]   2.4.1.41 [ KEGG ]   
PhosPhoSitePlusQ8NCW6
Domaine pattern : Prosite (Expaxy)RICIN_B_LECTIN (PS50231)   
Domains : Interpro (EBI)Glyco_trans_2-like    Nucleotide-diphossugar_trans    Ricin_B_lectin   
Domain families : Pfam (Sanger)Glycos_transf_2 (PF00535)    Ricin_B_lectin (PF00652)   
Domain families : Pfam (NCBI)pfam00535    pfam00652   
Domain families : Smart (EMBL)RICIN (SM00458)  
Conserved Domain (NCBI)GALNT11
DMDM Disease mutations63917
Blocks (Seattle)GALNT11
SuperfamilyQ8NCW6
Human Protein AtlasENSG00000178234
Peptide AtlasQ8NCW6
HPRD13560
IPIIPI00456589   IPI00456591   IPI00927296   IPI00921955   IPI00926890   IPI00926277   IPI00926467   IPI00926105   IPI00925404   IPI00925680   
Protein Interaction databases
DIP (DOE-UCLA)Q8NCW6
IntAct (EBI)Q8NCW6
FunCoupENSG00000178234
BioGRIDGALNT11
STRING (EMBL)GALNT11
ZODIACGALNT11
Ontologies - Pathways
QuickGOQ8NCW6
Ontology : AmiGOGolgi membrane  polypeptide N-acetylgalactosaminyltransferase activity  polypeptide N-acetylgalactosaminyltransferase activity  Notch binding  Notch receptor processing  determination of left/right symmetry  regulation of Notch signaling pathway  integral component of membrane  O-glycan processing  protein O-linked glycosylation via threonine  carbohydrate binding  metal ion binding  cilium assembly  Notch signaling involved in heart development  
Ontology : EGO-EBIGolgi membrane  polypeptide N-acetylgalactosaminyltransferase activity  polypeptide N-acetylgalactosaminyltransferase activity  Notch binding  Notch receptor processing  determination of left/right symmetry  regulation of Notch signaling pathway  integral component of membrane  O-glycan processing  protein O-linked glycosylation via threonine  carbohydrate binding  metal ion binding  cilium assembly  Notch signaling involved in heart development  
Pathways : KEGGMucin type O-Glycan biosynthesis   
NDEx NetworkGALNT11
Atlas of Cancer Signalling NetworkGALNT11
Wikipedia pathwaysGALNT11
Orthology - Evolution
OrthoDB63917
GeneTree (enSembl)ENSG00000178234
Phylogenetic Trees/Animal Genes : TreeFamGALNT11
HOVERGENQ8NCW6
HOGENOMQ8NCW6
Homologs : HomoloGeneGALNT11
Homology/Alignments : Family Browser (UCSC)GALNT11
Gene fusions - Rearrangements
Fusion: TCGAGALNT11 PRKAG2
Fusion: TCGAGALNT11 FKBP3
Fusion: TCGAGALNT11 EZH2
Fusion: TCGAGALNT11 LMBR1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGALNT11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GALNT11
dbVarGALNT11
ClinVarGALNT11
1000_GenomesGALNT11 
Exome Variant ServerGALNT11
ExAC (Exome Aggregation Consortium)GALNT11 (select the gene name)
Genetic variants : HAPMAP63917
Genomic Variants (DGV)GALNT11 [DGVbeta]
DECIPHERGALNT11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGALNT11 
Mutations
ICGC Data PortalGALNT11 
TCGA Data PortalGALNT11 
Broad Tumor PortalGALNT11
OASIS PortalGALNT11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGALNT11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGALNT11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GALNT11
DgiDB (Drug Gene Interaction Database)GALNT11
DoCM (Curated mutations)GALNT11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GALNT11 (select a term)
intoGenGALNT11
Cancer3DGALNT11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615130   
Orphanet
MedgenGALNT11
Genetic Testing Registry GALNT11
NextProtQ8NCW6 [Medical]
TSGene63917
GENETestsGALNT11
Target ValidationGALNT11
Huge Navigator GALNT11 [HugePedia]
snp3D : Map Gene to Disease63917
BioCentury BCIQGALNT11
ClinGenGALNT11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD63917
Chemical/Pharm GKB GenePA134911149
Clinical trialGALNT11
Miscellaneous
canSAR (ICR)GALNT11 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGALNT11
EVEXGALNT11
GoPubMedGALNT11
iHOPGALNT11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:09:08 CEST 2017

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