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GALNT11 (polypeptide N-acetylgalactosaminyltransferase 11)

Identity

Alias (NCBI)GALNAC-T11
GALNACT11
HGNC (Hugo) GALNT11
HGNC Alias symbGalNAc-T11
HGNC Alias namepolypeptide GalNAc transferase 11
HGNC Previous nameUDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11 (GalNAc-T11)
LocusID (NCBI) 63917
Atlas_Id 63683
Location 7q36.1  [Link to chromosome band 7q36]
Location_base_pair Starts at 152025674 and ends at 152122340 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
GALNT11 (7q36.1) / DPP6 (7q36.2)GALNT11 (7q36.1) / EZH2 (7q36.1)GALNT11 (7q36.1) / FKBP3 (14q21.2)
GALNT11 (7q36.1) / GALNT11 (7q36.1)GALNT11 (7q36.1) / LMBR1 (7q36.3)GALNT11 (7q36.1) / PRKAG2 (7q36.1)
KIF1B (1p36.22) / GALNT11 (7q36.1)PTPRN2 (7q36.3) / GALNT11 (7q36.1)GALNT11 PRKAG2
GALNT11 FKBP3GALNT11 EZH2GALNT11 LMBR1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)GALNT11   19875
Cards
Entrez_Gene (NCBI)GALNT11    polypeptide N-acetylgalactosaminyltransferase 11
AliasesGALNAC-T11; GALNACT11
GeneCards (Weizmann)GALNT11
Ensembl hg19 (Hinxton)ENSG00000178234 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000178234 [Gene_View]  ENSG00000178234 [Sequence]  chr7:152025674-152122340 [Contig_View]  GALNT11 [Vega]
ICGC DataPortalENSG00000178234
TCGA cBioPortalGALNT11
AceView (NCBI)GALNT11
Genatlas (Paris)GALNT11
SOURCE (Princeton)GALNT11
Genetics Home Reference (NIH)GALNT11
Genomic and cartography
GoldenPath hg38 (UCSC)GALNT11  -     chr7:152025674-152122340 +  7q36.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GALNT11  -     7q36.1   [Description]    (hg19-Feb_2009)
GoldenPathGALNT11 - 7q36.1 [CytoView hg19]  GALNT11 - 7q36.1 [CytoView hg38]
ImmunoBaseENSG00000178234
Genome Data Viewer NCBIGALNT11 [Mapview hg19]  
OMIM615130   
Gene and transcription
Genbank (Entrez)AK025287 AK026056 AK124934 AK128545 AK296097
RefSeq transcript (Entrez)NM_001304514 NM_001371458 NM_001371459 NM_001371460 NM_001371461 NM_001371462 NM_001371463 NM_001371464 NM_001371465 NM_001371466 NM_001371467 NM_001371468 NM_001371469 NM_001371470 NM_001371471 NM_001371472 NM_001371473 NM_001371474 NM_001371475 NM_022087
Consensus coding sequences : CCDS (NCBI)GALNT11
Gene ExpressionGALNT11 [ NCBI-GEO ]   GALNT11 [ EBI - ARRAY_EXPRESS ]   GALNT11 [ SEEK ]   GALNT11 [ MEM ]
Gene Expression Viewer (FireBrowse)GALNT11 [ Firebrowse - Broad ]
GenevisibleExpression of GALNT11 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)63917
GTEX Portal (Tissue expression)GALNT11
Human Protein AtlasENSG00000178234-GALNT11 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NCW6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NCW6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NCW6
Catalytic activity : Enzyme2.4.1.41 [ Enzyme-Expasy ]   2.4.1.412.4.1.41 [ IntEnz-EBI ]   2.4.1.41 [ BRENDA ]   2.4.1.41 [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusQ8NCW6
Domaine pattern : Prosite (Expaxy)RICIN_B_LECTIN (PS50231)   
Domains : Interpro (EBI)Glyco_trans_2-like    Nucleotide-diphossugar_trans    Ricin_B-like_lectins    Ricin_B_lectin   
Domain families : Pfam (Sanger)Glycos_transf_2 (PF00535)    Ricin_B_lectin (PF00652)   
Domain families : Pfam (NCBI)pfam00535    pfam00652   
Domain families : Smart (EMBL)RICIN (SM00458)  
Conserved Domain (NCBI)GALNT11
SuperfamilyQ8NCW6
AlphaFold pdb e-kbQ8NCW6   
Human Protein Atlas [tissue]ENSG00000178234-GALNT11 [tissue]
HPRD13560
Protein Interaction databases
DIP (DOE-UCLA)Q8NCW6
IntAct (EBI)Q8NCW6
BioGRIDGALNT11
STRING (EMBL)GALNT11
ZODIACGALNT11
Ontologies - Pathways
QuickGOQ8NCW6
Ontology : AmiGOGolgi membrane  polypeptide N-acetylgalactosaminyltransferase activity  Notch binding  Notch binding  Golgi apparatus  Notch receptor processing  determination of left/right symmetry  regulation of Notch signaling pathway  regulation of Notch signaling pathway  integral component of membrane  O-glycan processing  protein O-linked glycosylation via threonine  carbohydrate binding  metal ion binding  cilium assembly  Notch signaling involved in heart development  
Ontology : EGO-EBIGolgi membrane  polypeptide N-acetylgalactosaminyltransferase activity  Notch binding  Notch binding  Golgi apparatus  Notch receptor processing  determination of left/right symmetry  regulation of Notch signaling pathway  regulation of Notch signaling pathway  integral component of membrane  O-glycan processing  protein O-linked glycosylation via threonine  carbohydrate binding  metal ion binding  cilium assembly  Notch signaling involved in heart development  
Pathways : KEGGGlycan structures - biosynthesis 1    O-Glycan biosynthesis   
NDEx NetworkGALNT11
Atlas of Cancer Signalling NetworkGALNT11
Wikipedia pathwaysGALNT11
Orthology - Evolution
OrthoDB63917
GeneTree (enSembl)ENSG00000178234
Phylogenetic Trees/Animal Genes : TreeFamGALNT11
Homologs : HomoloGeneGALNT11
Homology/Alignments : Family Browser (UCSC)GALNT11
Gene fusions - Rearrangements
Fusion : QuiverGALNT11
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGALNT11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GALNT11
dbVarGALNT11
ClinVarGALNT11
MonarchGALNT11
1000_GenomesGALNT11 
Exome Variant ServerGALNT11
GNOMAD BrowserENSG00000178234
Varsome BrowserGALNT11
ACMGGALNT11 variants
VarityQ8NCW6
Genomic Variants (DGV)GALNT11 [DGVbeta]
DECIPHERGALNT11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGALNT11 
Mutations
ICGC Data PortalGALNT11 
TCGA Data PortalGALNT11 
Broad Tumor PortalGALNT11
OASIS PortalGALNT11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGALNT11  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DGALNT11
Mutations and Diseases : HGMDGALNT11
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaGALNT11
DgiDB (Drug Gene Interaction Database)GALNT11
DoCM (Curated mutations)GALNT11
CIViC (Clinical Interpretations of Variants in Cancer)GALNT11
Cancer3DGALNT11
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615130   
Orphanet
DisGeNETGALNT11
MedgenGALNT11
Genetic Testing Registry GALNT11
NextProtQ8NCW6 [Medical]
GENETestsGALNT11
Target ValidationGALNT11
Huge Navigator GALNT11 [HugePedia]
ClinGenGALNT11
Clinical trials, drugs, therapy
MyCancerGenomeGALNT11
Protein Interactions : CTDGALNT11
Pharm GKB GenePA134911149
PharosQ8NCW6
Clinical trialGALNT11
Miscellaneous
canSAR (ICR)GALNT11
HarmonizomeGALNT11
DataMed IndexGALNT11
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXGALNT11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:51:09 CEST 2021

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