Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

GALNT12 (polypeptide N-acetylgalactosaminyltransferase 12)

Identity

Alias_namesUDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12 (GalNAc-T12)
Alias_symbol (synonym)GalNAc-T12
Other aliasCRCS1
HGNC (Hugo) GALNT12
LocusID (NCBI) 79695
Atlas_Id 46300
Location 9q22.33  [Link to chromosome band 9q22]
Location_base_pair Starts at 101569981 and ends at 101612363 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GALNT12   19877
Cards
Entrez_Gene (NCBI)GALNT12  79695  polypeptide N-acetylgalactosaminyltransferase 12
AliasesCRCS1; GalNAc-T12
GeneCards (Weizmann)GALNT12
Ensembl hg19 (Hinxton)ENSG00000119514 [Gene_View]  chr9:101569981-101612363 [Contig_View]  GALNT12 [Vega]
Ensembl hg38 (Hinxton)ENSG00000119514 [Gene_View]  chr9:101569981-101612363 [Contig_View]  GALNT12 [Vega]
ICGC DataPortalENSG00000119514
TCGA cBioPortalGALNT12
AceView (NCBI)GALNT12
Genatlas (Paris)GALNT12
WikiGenes79695
SOURCE (Princeton)GALNT12
Genetics Home Reference (NIH)GALNT12
Genomic and cartography
GoldenPath hg19 (UCSC)GALNT12  -     chr9:101569981-101612363 +  9q22.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GALNT12  -     9q22.33   [Description]    (hg38-Dec_2013)
EnsemblGALNT12 - 9q22.33 [CytoView hg19]  GALNT12 - 9q22.33 [CytoView hg38]
Mapping of homologs : NCBIGALNT12 [Mapview hg19]  GALNT12 [Mapview hg38]
OMIM608812   610290   
Gene and transcription
Genbank (Entrez)AB040673 AB078146 AJ132365 AJ505963 AK024865
RefSeq transcript (Entrez)NM_024642
RefSeq genomic (Entrez)NC_000009 NC_018920 NG_028218 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)GALNT12
Cluster EST : UnigeneHs.47099 [ NCBI ]
CGAP (NCI)Hs.47099
Alternative Splicing GalleryENSG00000119514
Gene ExpressionGALNT12 [ NCBI-GEO ]   GALNT12 [ EBI - ARRAY_EXPRESS ]   GALNT12 [ SEEK ]   GALNT12 [ MEM ]
Gene Expression Viewer (FireBrowse)GALNT12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79695
GTEX Portal (Tissue expression)GALNT12
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IXK2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IXK2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IXK2
Splice isoforms : SwissVarQ8IXK2
Catalytic activity : Enzyme2.4.1.41 [ Enzyme-Expasy ]   2.4.1.412.4.1.41 [ IntEnz-EBI ]   2.4.1.41 [ BRENDA ]   2.4.1.41 [ KEGG ]   
PhosPhoSitePlusQ8IXK2
Domaine pattern : Prosite (Expaxy)RICIN_B_LECTIN (PS50231)   
Domains : Interpro (EBI)Glyco_trans_2-like    Nucleotide-diphossugar_trans    Ricin_B_lectin   
Domain families : Pfam (Sanger)Glycos_transf_2 (PF00535)    Ricin_B_lectin (PF00652)   
Domain families : Pfam (NCBI)pfam00535    pfam00652   
Domain families : Smart (EMBL)RICIN (SM00458)  
Conserved Domain (NCBI)GALNT12
DMDM Disease mutations79695
Blocks (Seattle)GALNT12
SuperfamilyQ8IXK2
Human Protein AtlasENSG00000119514
Peptide AtlasQ8IXK2
HPRD13561
IPIIPI00456149   IPI00456150   
Protein Interaction databases
DIP (DOE-UCLA)Q8IXK2
IntAct (EBI)Q8IXK2
FunCoupENSG00000119514
BioGRIDGALNT12
STRING (EMBL)GALNT12
ZODIACGALNT12
Ontologies - Pathways
QuickGOQ8IXK2
Ontology : AmiGOGolgi membrane  polypeptide N-acetylgalactosaminyltransferase activity  integral component of membrane  O-glycan processing  carbohydrate binding  metal ion binding  
Ontology : EGO-EBIGolgi membrane  polypeptide N-acetylgalactosaminyltransferase activity  integral component of membrane  O-glycan processing  carbohydrate binding  metal ion binding  
Pathways : KEGGMucin type O-Glycan biosynthesis   
NDEx NetworkGALNT12
Atlas of Cancer Signalling NetworkGALNT12
Wikipedia pathwaysGALNT12
Orthology - Evolution
OrthoDB79695
GeneTree (enSembl)ENSG00000119514
Phylogenetic Trees/Animal Genes : TreeFamGALNT12
HOVERGENQ8IXK2
HOGENOMQ8IXK2
Homologs : HomoloGeneGALNT12
Homology/Alignments : Family Browser (UCSC)GALNT12
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGALNT12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GALNT12
dbVarGALNT12
ClinVarGALNT12
1000_GenomesGALNT12 
Exome Variant ServerGALNT12
ExAC (Exome Aggregation Consortium)GALNT12 (select the gene name)
Genetic variants : HAPMAP79695
Genomic Variants (DGV)GALNT12 [DGVbeta]
DECIPHER (Syndromes)9:101569981-101612363  ENSG00000119514
CONAN: Copy Number AnalysisGALNT12 
Mutations
ICGC Data PortalGALNT12 
TCGA Data PortalGALNT12 
Broad Tumor PortalGALNT12
OASIS PortalGALNT12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGALNT12  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGALNT12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Colon cancer gene variant databases
BioMutasearch GALNT12
DgiDB (Drug Gene Interaction Database)GALNT12
DoCM (Curated mutations)GALNT12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GALNT12 (select a term)
intoGenGALNT12
Cancer3DGALNT12(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608812    610290   
Orphanet
MedgenGALNT12
Genetic Testing Registry GALNT12
NextProtQ8IXK2 [Medical]
TSGene79695
GENETestsGALNT12
Huge Navigator GALNT12 [HugePedia]
snp3D : Map Gene to Disease79695
BioCentury BCIQGALNT12
ClinGenGALNT12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79695
Chemical/Pharm GKB GenePA134929192
Clinical trialGALNT12
Miscellaneous
canSAR (ICR)GALNT12 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGALNT12
EVEXGALNT12
GoPubMedGALNT12
iHOPGALNT12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 15:02:01 CEST 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.