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GALNT13 (polypeptide N-acetylgalactosaminyltransferase 13)

Identity

Alias_namesUDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 (GalNAc-T13)
Alias_symbol (synonym)KIAA1918
GalNAc-T13
Other alias
HGNC (Hugo) GALNT13
LocusID (NCBI) 114805
Atlas_Id 56036
Location 2q23.3  [Link to chromosome band 2q23]
Location_base_pair Starts at 153944394 and ends at 154453977 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AKAP9 (7q21.2) / GALNT13 (2q23.3)GALNT13 (2q23.3) / GALNT13 (2q23.3)GALNT13 (2q23.3) / USP34 (2p15)
HEATR6 (17q23.1) / GALNT13 (2q23.3)KCNJ3 (2q24.1) / GALNT13 (2q23.3)KIF5C (2q23.1) / GALNT13 (2q23.3)
PRKCA (17q24.2) / GALNT13 (2q23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GALNT13   23242
Cards
Entrez_Gene (NCBI)GALNT13  114805  polypeptide N-acetylgalactosaminyltransferase 13
AliasesGalNAc-T13
GeneCards (Weizmann)GALNT13
Ensembl hg19 (Hinxton)ENSG00000144278 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000144278 [Gene_View]  chr2:153944394-154453977 [Contig_View]  GALNT13 [Vega]
ICGC DataPortalENSG00000144278
TCGA cBioPortalGALNT13
AceView (NCBI)GALNT13
Genatlas (Paris)GALNT13
WikiGenes114805
SOURCE (Princeton)GALNT13
Genetics Home Reference (NIH)GALNT13
Genomic and cartography
GoldenPath hg38 (UCSC)GALNT13  -     chr2:153944394-154453977 +  2q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GALNT13  -     2q23.3   [Description]    (hg19-Feb_2009)
EnsemblGALNT13 - 2q23.3 [CytoView hg19]  GALNT13 - 2q23.3 [CytoView hg38]
Mapping of homologs : NCBIGALNT13 [Mapview hg19]  GALNT13 [Mapview hg38]
OMIM608369   
Gene and transcription
Genbank (Entrez)AB067505 AB078142 AJ505991 AK123152 AK131195
RefSeq transcript (Entrez)NM_001301627 NM_052917
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GALNT13
Cluster EST : UnigeneHs.470277 [ NCBI ]
CGAP (NCI)Hs.470277
Alternative Splicing GalleryENSG00000144278
Gene ExpressionGALNT13 [ NCBI-GEO ]   GALNT13 [ EBI - ARRAY_EXPRESS ]   GALNT13 [ SEEK ]   GALNT13 [ MEM ]
Gene Expression Viewer (FireBrowse)GALNT13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)114805
GTEX Portal (Tissue expression)GALNT13
Human Protein AtlasENSG00000144278-GALNT13 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IUC8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IUC8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IUC8
Splice isoforms : SwissVarQ8IUC8
Catalytic activity : Enzyme2.4.1.41 [ Enzyme-Expasy ]   2.4.1.412.4.1.41 [ IntEnz-EBI ]   2.4.1.41 [ BRENDA ]   2.4.1.41 [ KEGG ]   
PhosPhoSitePlusQ8IUC8
Domaine pattern : Prosite (Expaxy)RICIN_B_LECTIN (PS50231)   
Domains : Interpro (EBI)Glyco_trans_2-like    Nucleotide-diphossugar_trans    Ricin_B_lectin   
Domain families : Pfam (Sanger)Glycos_transf_2 (PF00535)    Ricin_B_lectin (PF00652)   
Domain families : Pfam (NCBI)pfam00535    pfam00652   
Domain families : Smart (EMBL)RICIN (SM00458)  
Conserved Domain (NCBI)GALNT13
DMDM Disease mutations114805
Blocks (Seattle)GALNT13
SuperfamilyQ8IUC8
Human Protein Atlas [tissue]ENSG00000144278-GALNT13 [tissue]
Peptide AtlasQ8IUC8
HPRD16325
IPIIPI00292550   IPI00455152   IPI00917548   IPI00917838   IPI00791020   IPI00915862   IPI00916025   
Protein Interaction databases
DIP (DOE-UCLA)Q8IUC8
IntAct (EBI)Q8IUC8
FunCoupENSG00000144278
BioGRIDGALNT13
STRING (EMBL)GALNT13
ZODIACGALNT13
Ontologies - Pathways
QuickGOQ8IUC8
Ontology : AmiGOGolgi membrane  polypeptide N-acetylgalactosaminyltransferase activity  integral component of membrane  O-glycan processing  carbohydrate binding  metal ion binding  
Ontology : EGO-EBIGolgi membrane  polypeptide N-acetylgalactosaminyltransferase activity  integral component of membrane  O-glycan processing  carbohydrate binding  metal ion binding  
Pathways : KEGGMucin type O-Glycan biosynthesis   
NDEx NetworkGALNT13
Atlas of Cancer Signalling NetworkGALNT13
Wikipedia pathwaysGALNT13
Orthology - Evolution
OrthoDB114805
GeneTree (enSembl)ENSG00000144278
Phylogenetic Trees/Animal Genes : TreeFamGALNT13
HOVERGENQ8IUC8
HOGENOMQ8IUC8
Homologs : HomoloGeneGALNT13
Homology/Alignments : Family Browser (UCSC)GALNT13
Gene fusions - Rearrangements
Tumor Fusion PortalGALNT13
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGALNT13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GALNT13
dbVarGALNT13
ClinVarGALNT13
1000_GenomesGALNT13 
Exome Variant ServerGALNT13
ExAC (Exome Aggregation Consortium)ENSG00000144278
GNOMAD BrowserENSG00000144278
Genetic variants : HAPMAP114805
Genomic Variants (DGV)GALNT13 [DGVbeta]
DECIPHERGALNT13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGALNT13 
Mutations
ICGC Data PortalGALNT13 
TCGA Data PortalGALNT13 
Broad Tumor PortalGALNT13
OASIS PortalGALNT13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGALNT13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGALNT13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GALNT13
DgiDB (Drug Gene Interaction Database)GALNT13
DoCM (Curated mutations)GALNT13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GALNT13 (select a term)
intoGenGALNT13
Cancer3DGALNT13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608369   
Orphanet
DisGeNETGALNT13
MedgenGALNT13
Genetic Testing Registry GALNT13
NextProtQ8IUC8 [Medical]
TSGene114805
GENETestsGALNT13
Target ValidationGALNT13
Huge Navigator GALNT13 [HugePedia]
snp3D : Map Gene to Disease114805
BioCentury BCIQGALNT13
ClinGenGALNT13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD114805
Chemical/Pharm GKB GenePA134887166
Clinical trialGALNT13
Miscellaneous
canSAR (ICR)GALNT13 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGALNT13
EVEXGALNT13
GoPubMedGALNT13
iHOPGALNT13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:14:10 CET 2017

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