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GALNT14 (polypeptide N-acetylgalactosaminyltransferase 14)

Identity

Alias_namesUDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14 (GalNAc-T14)
Alias_symbol (synonym)GalNac-T10
FLJ12691
GalNac-T14
Other aliasGALNT15
HGNC (Hugo) GALNT14
LocusID (NCBI) 79623
Atlas_Id 51524
Location 2p23.1  [Link to chromosome band 2p23]
Location_base_pair Starts at 30910465 and ends at 31138726 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CAPN13 (2p23.1) / GALNT14 (2p23.1)GALNT14 (2p23.1) / BRE (2p23.2)GALNT14 (2p23.1) / FAM98A (2p22.3)
GALNT14 (2p23.1) / GALNT14 (2p23.1)GALNT14 (2p23.1) / LAMTOR2 (1q22)KIAA1217 (10p12.2) / GALNT14 (2p23.1)
CAPN13 2p23.1 / GALNT14 2p23.1GALNT14 2p23.1 / FAM98A 2p22.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GALNT14   22946
Cards
Entrez_Gene (NCBI)GALNT14  79623  polypeptide N-acetylgalactosaminyltransferase 14
AliasesGALNT15; GalNac-T10; GalNac-T14
GeneCards (Weizmann)GALNT14
Ensembl hg19 (Hinxton)ENSG00000158089 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000158089 [Gene_View]  chr2:30910465-31138726 [Contig_View]  GALNT14 [Vega]
ICGC DataPortalENSG00000158089
TCGA cBioPortalGALNT14
AceView (NCBI)GALNT14
Genatlas (Paris)GALNT14
WikiGenes79623
SOURCE (Princeton)GALNT14
Genetics Home Reference (NIH)GALNT14
Genomic and cartography
GoldenPath hg38 (UCSC)GALNT14  -     chr2:30910465-31138726 -  2p23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GALNT14  -     2p23.1   [Description]    (hg19-Feb_2009)
EnsemblGALNT14 - 2p23.1 [CytoView hg19]  GALNT14 - 2p23.1 [CytoView hg38]
Mapping of homologs : NCBIGALNT14 [Mapview hg19]  GALNT14 [Mapview hg38]
OMIM608225   
Gene and transcription
Genbank (Entrez)AB078144 AJ505966 AK022753 AK074394 AK091313
RefSeq transcript (Entrez)NM_001253826 NM_001253827 NM_001329095 NM_001329096 NM_001329097 NM_024572
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GALNT14
Cluster EST : UnigeneHs.733100 [ NCBI ]
CGAP (NCI)Hs.733100
Alternative Splicing GalleryENSG00000158089
Gene ExpressionGALNT14 [ NCBI-GEO ]   GALNT14 [ EBI - ARRAY_EXPRESS ]   GALNT14 [ SEEK ]   GALNT14 [ MEM ]
Gene Expression Viewer (FireBrowse)GALNT14 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79623
GTEX Portal (Tissue expression)GALNT14
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96FL9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96FL9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96FL9
Splice isoforms : SwissVarQ96FL9
Catalytic activity : Enzyme2.4.1.41 [ Enzyme-Expasy ]   2.4.1.412.4.1.41 [ IntEnz-EBI ]   2.4.1.41 [ BRENDA ]   2.4.1.41 [ KEGG ]   
PhosPhoSitePlusQ96FL9
Domaine pattern : Prosite (Expaxy)RICIN_B_LECTIN (PS50231)   
Domains : Interpro (EBI)Glyco_trans_2-like    Nucleotide-diphossugar_trans    Ricin_B_lectin   
Domain families : Pfam (Sanger)Glycos_transf_2 (PF00535)    Ricin_B_lectin (PF00652)   
Domain families : Pfam (NCBI)pfam00535    pfam00652   
Domain families : Smart (EMBL)RICIN (SM00458)  
Conserved Domain (NCBI)GALNT14
DMDM Disease mutations79623
Blocks (Seattle)GALNT14
SuperfamilyQ96FL9
Human Protein AtlasENSG00000158089
Peptide AtlasQ96FL9
HPRD12194
IPIIPI00101384   IPI00456717   IPI00041868   IPI01013533   IPI00893944   IPI00893295   IPI00893180   
Protein Interaction databases
DIP (DOE-UCLA)Q96FL9
IntAct (EBI)Q96FL9
FunCoupENSG00000158089
BioGRIDGALNT14
STRING (EMBL)GALNT14
ZODIACGALNT14
Ontologies - Pathways
QuickGOQ96FL9
Ontology : AmiGOGolgi membrane  polypeptide N-acetylgalactosaminyltransferase activity  integral component of membrane  O-glycan processing  carbohydrate binding  metal ion binding  
Ontology : EGO-EBIGolgi membrane  polypeptide N-acetylgalactosaminyltransferase activity  integral component of membrane  O-glycan processing  carbohydrate binding  metal ion binding  
Pathways : KEGGMucin type O-Glycan biosynthesis   
NDEx NetworkGALNT14
Atlas of Cancer Signalling NetworkGALNT14
Wikipedia pathwaysGALNT14
Orthology - Evolution
OrthoDB79623
GeneTree (enSembl)ENSG00000158089
Phylogenetic Trees/Animal Genes : TreeFamGALNT14
HOVERGENQ96FL9
HOGENOMQ96FL9
Homologs : HomoloGeneGALNT14
Homology/Alignments : Family Browser (UCSC)GALNT14
Gene fusions - Rearrangements
Fusion : MitelmanCAPN13/GALNT14 [2p23.1/2p23.1]  [t(2;2)(p23;p23)]  
Fusion : MitelmanGALNT14/BRE [2p23.1/2p23.2]  [inv(2)(p23p23)]  
Fusion : MitelmanGALNT14/FAM98A [2p23.1/2p22.3]  [t(2;2)(p22;p23)]  
Fusion: TCGACAPN13 2p23.1 GALNT14 2p23.1 LUAD
Fusion: TCGAGALNT14 2p23.1 FAM98A 2p22.3 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGALNT14 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GALNT14
dbVarGALNT14
ClinVarGALNT14
1000_GenomesGALNT14 
Exome Variant ServerGALNT14
ExAC (Exome Aggregation Consortium)GALNT14 (select the gene name)
Genetic variants : HAPMAP79623
Genomic Variants (DGV)GALNT14 [DGVbeta]
DECIPHERGALNT14 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGALNT14 
Mutations
ICGC Data PortalGALNT14 
TCGA Data PortalGALNT14 
Broad Tumor PortalGALNT14
OASIS PortalGALNT14 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGALNT14  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGALNT14
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GALNT14
DgiDB (Drug Gene Interaction Database)GALNT14
DoCM (Curated mutations)GALNT14 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GALNT14 (select a term)
intoGenGALNT14
Cancer3DGALNT14(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608225   
Orphanet
MedgenGALNT14
Genetic Testing Registry GALNT14
NextProtQ96FL9 [Medical]
TSGene79623
GENETestsGALNT14
Target ValidationGALNT14
Huge Navigator GALNT14 [HugePedia]
snp3D : Map Gene to Disease79623
BioCentury BCIQGALNT14
ClinGenGALNT14
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79623
Chemical/Pharm GKB GenePA134920089
Clinical trialGALNT14
Miscellaneous
canSAR (ICR)GALNT14 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGALNT14
EVEXGALNT14
GoPubMedGALNT14
iHOPGALNT14
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:09:24 CEST 2017

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