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GALNT15 (polypeptide N-acetylgalactosaminyltransferase 15)

Identity

Alias_namesGALNTL2
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 15
Alias_symbol (synonym)GALNT7
pp-GalNAc-T15
Other aliasGALNACT15
GALNT13
PIH5
HGNC (Hugo) GALNT15
LocusID (NCBI) 117248
Atlas_Id 63685
Location 3p25.1  [Link to chromosome band 3p25]
Location_base_pair Starts at 16174322 and ends at 16231992 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GALNT15 (3p25.1) / GALNT15 (3p25.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GALNT15   21531
Cards
Entrez_Gene (NCBI)GALNT15  117248  polypeptide N-acetylgalactosaminyltransferase 15
AliasesGALNACT15; GALNT13; GALNT7; GALNTL2; 
PIH5; pp-GalNAc-T15
GeneCards (Weizmann)GALNT15
Ensembl hg19 (Hinxton)ENSG00000131386 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000131386 [Gene_View]  chr3:16174322-16231992 [Contig_View]  GALNT15 [Vega]
ICGC DataPortalENSG00000131386
TCGA cBioPortalGALNT15
AceView (NCBI)GALNT15
Genatlas (Paris)GALNT15
WikiGenes117248
SOURCE (Princeton)GALNT15
Genetics Home Reference (NIH)GALNT15
Genomic and cartography
GoldenPath hg38 (UCSC)GALNT15  -     chr3:16174322-16231992 +  3p25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GALNT15  -     3p25.1   [Description]    (hg19-Feb_2009)
EnsemblGALNT15 - 3p25.1 [CytoView hg19]  GALNT15 - 3p25.1 [CytoView hg38]
Mapping of homologs : NCBIGALNT15 [Mapview hg19]  GALNT15 [Mapview hg38]
OMIM615131   
Gene and transcription
Genbank (Entrez)AB078149 AF361251 AJ505964 AK094780 AK225673
RefSeq transcript (Entrez)NM_001319051 NM_001319052 NM_054110
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GALNT15
Cluster EST : UnigeneHs.411308 [ NCBI ]
CGAP (NCI)Hs.411308
Alternative Splicing GalleryENSG00000131386
Gene ExpressionGALNT15 [ NCBI-GEO ]   GALNT15 [ EBI - ARRAY_EXPRESS ]   GALNT15 [ SEEK ]   GALNT15 [ MEM ]
Gene Expression Viewer (FireBrowse)GALNT15 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)117248
GTEX Portal (Tissue expression)GALNT15
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N3T1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N3T1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N3T1
Splice isoforms : SwissVarQ8N3T1
Catalytic activity : Enzyme2.4.1.41 [ Enzyme-Expasy ]   2.4.1.412.4.1.41 [ IntEnz-EBI ]   2.4.1.41 [ BRENDA ]   2.4.1.41 [ KEGG ]   
PhosPhoSitePlusQ8N3T1
Domaine pattern : Prosite (Expaxy)RICIN_B_LECTIN (PS50231)   
Domains : Interpro (EBI)Glyco_trans_2-like    Nucleotide-diphossugar_trans    Ricin_B_lectin   
Domain families : Pfam (Sanger)Glycos_transf_2 (PF00535)    Ricin_B_lectin (PF00652)   
Domain families : Pfam (NCBI)pfam00535    pfam00652   
Domain families : Smart (EMBL)RICIN (SM00458)  
Conserved Domain (NCBI)GALNT15
DMDM Disease mutations117248
Blocks (Seattle)GALNT15
SuperfamilyQ8N3T1
Human Protein AtlasENSG00000131386
Peptide AtlasQ8N3T1
HPRD13563
IPIIPI00384013   IPI00646314   IPI00793568   IPI00925954   
Protein Interaction databases
DIP (DOE-UCLA)Q8N3T1
IntAct (EBI)Q8N3T1
FunCoupENSG00000131386
BioGRIDGALNT15
STRING (EMBL)GALNT15
ZODIACGALNT15
Ontologies - Pathways
QuickGOQ8N3T1
Ontology : AmiGOGolgi membrane  polypeptide N-acetylgalactosaminyltransferase activity  integral component of membrane  O-glycan processing  transport vesicle  carbohydrate binding  metal ion binding  
Ontology : EGO-EBIGolgi membrane  polypeptide N-acetylgalactosaminyltransferase activity  integral component of membrane  O-glycan processing  transport vesicle  carbohydrate binding  metal ion binding  
Pathways : KEGGMucin type O-Glycan biosynthesis   
NDEx NetworkGALNT15
Atlas of Cancer Signalling NetworkGALNT15
Wikipedia pathwaysGALNT15
Orthology - Evolution
OrthoDB117248
GeneTree (enSembl)ENSG00000131386
Phylogenetic Trees/Animal Genes : TreeFamGALNT15
HOVERGENQ8N3T1
HOGENOMQ8N3T1
Homologs : HomoloGeneGALNT15
Homology/Alignments : Family Browser (UCSC)GALNT15
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGALNT15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GALNT15
dbVarGALNT15
ClinVarGALNT15
1000_GenomesGALNT15 
Exome Variant ServerGALNT15
ExAC (Exome Aggregation Consortium)GALNT15 (select the gene name)
Genetic variants : HAPMAP117248
Genomic Variants (DGV)GALNT15 [DGVbeta]
DECIPHERGALNT15 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGALNT15 
Mutations
ICGC Data PortalGALNT15 
TCGA Data PortalGALNT15 
Broad Tumor PortalGALNT15
OASIS PortalGALNT15 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDGALNT15
BioMutasearch GALNT15
DgiDB (Drug Gene Interaction Database)GALNT15
DoCM (Curated mutations)GALNT15 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GALNT15 (select a term)
intoGenGALNT15
Cancer3DGALNT15(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615131   
Orphanet
MedgenGALNT15
Genetic Testing Registry GALNT15
NextProtQ8N3T1 [Medical]
TSGene117248
GENETestsGALNT15
Target ValidationGALNT15
Huge Navigator GALNT15 [HugePedia]
snp3D : Map Gene to Disease117248
BioCentury BCIQGALNT15
ClinGenGALNT15
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD117248
Chemical/Pharm GKB GenePA134936170
Clinical trialGALNT15
Miscellaneous
canSAR (ICR)GALNT15 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGALNT15
EVEXGALNT15
GoPubMedGALNT15
iHOPGALNT15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:50:15 CEST 2017

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