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GALNT16 (polypeptide N-acetylgalactosaminyltransferase 16)

Identity

Alias_namesGALNTL1
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 16
Alias_symbol (synonym)KIAA1130
GalNAc-T16
Other aliasGALNACT16
HGNC (Hugo) GALNT16
LocusID (NCBI) 57452
Atlas_Id 63686
Location 14q24.1  [Link to chromosome band 14q24]
Location_base_pair Starts at 69726681 and ends at 69821190 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
GALNT16 (14q24.1) / DOCK1 (10q26.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GALNT16   23233
Cards
Entrez_Gene (NCBI)GALNT16  57452  polypeptide N-acetylgalactosaminyltransferase 16
AliasesGALNACT16; GALNTL1; GalNAc-T16
GeneCards (Weizmann)GALNT16
Ensembl hg19 (Hinxton) [Gene_View]  chr14:69726681-69821190 [Contig_View]  GALNT16 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr14:69726681-69821190 [Contig_View]  GALNT16 [Vega]
TCGA cBioPortalGALNT16
AceView (NCBI)GALNT16
Genatlas (Paris)GALNT16
WikiGenes57452
SOURCE (Princeton)GALNT16
Genetics Home Reference (NIH)GALNT16
Genomic and cartography
GoldenPath hg19 (UCSC)GALNT16  -     chr14:69726681-69821190 +  14q24.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GALNT16  -     14q24.1   [Description]    (hg38-Dec_2013)
EnsemblGALNT16 - 14q24.1 [CytoView hg19]  GALNT16 - 14q24.1 [CytoView hg38]
Mapping of homologs : NCBIGALNT16 [Mapview hg19]  GALNT16 [Mapview hg38]
OMIM615132   
Gene and transcription
Genbank (Entrez)AB032956 AB078143 AJ505951 AK091426 AK289745
RefSeq transcript (Entrez)NM_001168368 NM_020692
RefSeq genomic (Entrez)NC_000014 NC_018925 NT_026437 NW_004929393
Consensus coding sequences : CCDS (NCBI)GALNT16
Cluster EST : UnigeneHs.21035 [ NCBI ]
CGAP (NCI)Hs.21035
Gene ExpressionGALNT16 [ NCBI-GEO ]   GALNT16 [ EBI - ARRAY_EXPRESS ]   GALNT16 [ SEEK ]   GALNT16 [ MEM ]
Gene Expression Viewer (FireBrowse)GALNT16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57452
GTEX Portal (Tissue expression)GALNT16
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N428   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N428  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N428
Splice isoforms : SwissVarQ8N428
Catalytic activity : Enzyme2.4.1.41 [ Enzyme-Expasy ]   2.4.1.412.4.1.41 [ IntEnz-EBI ]   2.4.1.41 [ BRENDA ]   2.4.1.41 [ KEGG ]   
PhosPhoSitePlusQ8N428
Domaine pattern : Prosite (Expaxy)RICIN_B_LECTIN (PS50231)   
Domains : Interpro (EBI)Galactosyl_T_C    Glyco_trans_2-like    Nucleotide-diphossugar_trans    Ricin_B_lectin   
Domain families : Pfam (Sanger)Glyco_transf_7C (PF02709)    Glycos_transf_2 (PF00535)    Ricin_B_lectin (PF00652)   
Domain families : Pfam (NCBI)pfam02709    pfam00535    pfam00652   
Domain families : Smart (EMBL)RICIN (SM00458)  
Conserved Domain (NCBI)GALNT16
DMDM Disease mutations57452
Blocks (Seattle)GALNT16
SuperfamilyQ8N428
Peptide AtlasQ8N428
HPRD13562
IPIIPI00166613   IPI00456715   IPI01013757   IPI00983558   
Protein Interaction databases
DIP (DOE-UCLA)Q8N428
IntAct (EBI)Q8N428
BioGRIDGALNT16
STRING (EMBL)GALNT16
ZODIACGALNT16
Ontologies - Pathways
QuickGOQ8N428
Ontology : AmiGOGolgi membrane  polypeptide N-acetylgalactosaminyltransferase activity  protein glycosylation  integral component of membrane  carbohydrate binding  metal ion binding  extracellular exosome  
Ontology : EGO-EBIGolgi membrane  polypeptide N-acetylgalactosaminyltransferase activity  protein glycosylation  integral component of membrane  carbohydrate binding  metal ion binding  extracellular exosome  
Pathways : KEGGMucin type O-Glycan biosynthesis   
NDEx NetworkGALNT16
Atlas of Cancer Signalling NetworkGALNT16
Wikipedia pathwaysGALNT16
Orthology - Evolution
OrthoDB57452
Phylogenetic Trees/Animal Genes : TreeFamGALNT16
HOVERGENQ8N428
HOGENOMQ8N428
Homologs : HomoloGeneGALNT16
Homology/Alignments : Family Browser (UCSC)GALNT16
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGALNT16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GALNT16
dbVarGALNT16
ClinVarGALNT16
1000_GenomesGALNT16 
Exome Variant ServerGALNT16
ExAC (Exome Aggregation Consortium)GALNT16 (select the gene name)
Genetic variants : HAPMAP57452
Genomic Variants (DGV)GALNT16 [DGVbeta]
DECIPHER (Syndromes)14:69726681-69821190  
CONAN: Copy Number AnalysisGALNT16 
Mutations
ICGC Data PortalGALNT16 
TCGA Data PortalGALNT16 
Broad Tumor PortalGALNT16
OASIS PortalGALNT16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGALNT16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGALNT16
BioMutasearch GALNT16
DgiDB (Drug Gene Interaction Database)GALNT16
DoCM (Curated mutations)GALNT16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GALNT16 (select a term)
intoGenGALNT16
Cancer3DGALNT16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615132   
Orphanet
MedgenGALNT16
Genetic Testing Registry GALNT16
NextProtQ8N428 [Medical]
TSGene57452
GENETestsGALNT16
Huge Navigator GALNT16 [HugePedia]
snp3D : Map Gene to Disease57452
BioCentury BCIQGALNT16
ClinGenGALNT16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57452
Chemical/Pharm GKB GenePA134991608
Clinical trialGALNT16
Miscellaneous
canSAR (ICR)GALNT16 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGALNT16
EVEXGALNT16
GoPubMedGALNT16
iHOPGALNT16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:05:45 CET 2017

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