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GALNT18 (polypeptide N-acetylgalactosaminyltransferase 18)

Identity

Alias_namesGALNTL4
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 4
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 18
Alias_symbol (synonym)MGC71806
GALNT15
GalNAc-T18
Other aliasGALNACT18
GalNAc-T15
HGNC (Hugo) GALNT18
LocusID (NCBI) 374378
Atlas_Id 63687
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 11270874 and ends at 11622014 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
GALNT18 (11p15.3) / DENND5B (12p11.21)GALNT18 (11p15.3) / DZIP3 (3q13.13)GALNT18 (11p15.3) / IER3IP1 (18q21.1)
GALNT18 (11p15.3) / PPP1R1B (17q12)GALNT18 (11p15.3) / PRDM2 (1p36.21)SOX6 (11p15.2) / GALNT18 (11p15.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 5 ]
  t(1;11)(p36;p15) GALNT18/PRDM2
t(11;11)(p15;p15) SOX6/GALNT18
t(11;12)(p15;p11) GALNT18/DENND5B
t(11;17)(p15;q12) GALNT18/PPP1R1B
t(11;18)(p15;q21) GALNT18/IER3IP1

External links

Nomenclature
HGNC (Hugo)GALNT18   30488
Cards
Entrez_Gene (NCBI)GALNT18  374378  polypeptide N-acetylgalactosaminyltransferase 18
AliasesGALNACT18; GALNT15; GALNTL4; GalNAc-T15; 
GalNAc-T18
GeneCards (Weizmann)GALNT18
Ensembl hg19 (Hinxton)ENSG00000110328 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000110328 [Gene_View]  chr11:11270874-11622014 [Contig_View]  GALNT18 [Vega]
ICGC DataPortalENSG00000110328
TCGA cBioPortalGALNT18
AceView (NCBI)GALNT18
Genatlas (Paris)GALNT18
WikiGenes374378
SOURCE (Princeton)GALNT18
Genetics Home Reference (NIH)GALNT18
Genomic and cartography
GoldenPath hg38 (UCSC)GALNT18  -     chr11:11270874-11622014 -  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GALNT18  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblGALNT18 - 11p15.4 [CytoView hg19]  GALNT18 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIGALNT18 [Mapview hg19]  GALNT18 [Mapview hg38]
OMIM615136   
Gene and transcription
Genbank (Entrez)AB078147 AF131852 AJ626724 AK055111 AK124690
RefSeq transcript (Entrez)NM_198516
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GALNT18
Cluster EST : UnigeneHs.667788 [ NCBI ]
CGAP (NCI)Hs.667788
Alternative Splicing GalleryENSG00000110328
Gene ExpressionGALNT18 [ NCBI-GEO ]   GALNT18 [ EBI - ARRAY_EXPRESS ]   GALNT18 [ SEEK ]   GALNT18 [ MEM ]
Gene Expression Viewer (FireBrowse)GALNT18 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)374378
GTEX Portal (Tissue expression)GALNT18
Human Protein AtlasENSG00000110328-GALNT18 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P9A2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P9A2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P9A2
Splice isoforms : SwissVarQ6P9A2
Catalytic activity : Enzyme2.4.1.41 [ Enzyme-Expasy ]   2.4.1.412.4.1.41 [ IntEnz-EBI ]   2.4.1.41 [ BRENDA ]   2.4.1.41 [ KEGG ]   
PhosPhoSitePlusQ6P9A2
Domaine pattern : Prosite (Expaxy)RICIN_B_LECTIN (PS50231)   
Domains : Interpro (EBI)Glyco_trans_2-like    Nucleotide-diphossugar_trans    Ricin_B_lectin   
Domain families : Pfam (Sanger)Glycos_transf_2 (PF00535)    Ricin_B_lectin (PF00652)   
Domain families : Pfam (NCBI)pfam00535    pfam00652   
Domain families : Smart (EMBL)RICIN (SM00458)  
Conserved Domain (NCBI)GALNT18
DMDM Disease mutations374378
Blocks (Seattle)GALNT18
SuperfamilyQ6P9A2
Human Protein Atlas [tissue]ENSG00000110328-GALNT18 [tissue]
Peptide AtlasQ6P9A2
HPRD13564
IPIIPI00168626   IPI00454596   
Protein Interaction databases
DIP (DOE-UCLA)Q6P9A2
IntAct (EBI)Q6P9A2
FunCoupENSG00000110328
BioGRIDGALNT18
STRING (EMBL)GALNT18
ZODIACGALNT18
Ontologies - Pathways
QuickGOQ6P9A2
Ontology : AmiGOGolgi membrane  polypeptide N-acetylgalactosaminyltransferase activity  protein glycosylation  integral component of membrane  carbohydrate binding  metal ion binding  
Ontology : EGO-EBIGolgi membrane  polypeptide N-acetylgalactosaminyltransferase activity  protein glycosylation  integral component of membrane  carbohydrate binding  metal ion binding  
NDEx NetworkGALNT18
Atlas of Cancer Signalling NetworkGALNT18
Wikipedia pathwaysGALNT18
Orthology - Evolution
OrthoDB374378
GeneTree (enSembl)ENSG00000110328
Phylogenetic Trees/Animal Genes : TreeFamGALNT18
HOVERGENQ6P9A2
HOGENOMQ6P9A2
Homologs : HomoloGeneGALNT18
Homology/Alignments : Family Browser (UCSC)GALNT18
Gene fusions - Rearrangements
Fusion : QuiverGALNT18
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGALNT18 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GALNT18
dbVarGALNT18
ClinVarGALNT18
1000_GenomesGALNT18 
Exome Variant ServerGALNT18
ExAC (Exome Aggregation Consortium)ENSG00000110328
GNOMAD BrowserENSG00000110328
Genetic variants : HAPMAP374378
Genomic Variants (DGV)GALNT18 [DGVbeta]
DECIPHERGALNT18 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGALNT18 
Mutations
ICGC Data PortalGALNT18 
TCGA Data PortalGALNT18 
Broad Tumor PortalGALNT18
OASIS PortalGALNT18 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDGALNT18
BioMutasearch GALNT18
DgiDB (Drug Gene Interaction Database)GALNT18
DoCM (Curated mutations)GALNT18 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GALNT18 (select a term)
intoGenGALNT18
Cancer3DGALNT18(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615136   
Orphanet
DisGeNETGALNT18
MedgenGALNT18
Genetic Testing Registry GALNT18
NextProtQ6P9A2 [Medical]
TSGene374378
GENETestsGALNT18
Target ValidationGALNT18
Huge Navigator GALNT18 [HugePedia]
snp3D : Map Gene to Disease374378
BioCentury BCIQGALNT18
ClinGenGALNT18
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD374378
Chemical/Pharm GKB GenePA134950929
Clinical trialGALNT18
Miscellaneous
canSAR (ICR)GALNT18 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGALNT18
EVEXGALNT18
GoPubMedGALNT18
iHOPGALNT18
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Feb 23 18:19:46 CET 2018
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