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GALNT2 (polypeptide N-acetylgalactosaminyltransferase 2)

Identity

Alias (NCBI)CDG2T
GalNAc-T2
HGNC (Hugo) GALNT2
HGNC Alias symbGalNAc-T2
HGNC Alias namepolypeptide GalNAc transferase 2
HGNC Previous nameUDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2)
LocusID (NCBI) 2590
Atlas_Id 56469
Location 1q42.13  [Link to chromosome band 1q42]
Location_base_pair Starts at 230067238 and ends at 230282122 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
GALNT2 (1q42.13) / AUTS2 (7q11.22)GALNT2 (1q42.13) / BRD9 (5p15.33)GALNT2 (1q42.13) / C1orf198 (1q42.2)
GALNT2 (1q42.13) / GALNT2 (1q42.13)GALNT2 (1q42.13) / KIF26B (1q44)GALNT2 (1q42.13) / MEMO1 (2p23.1)
SMOC1 (14q24.2) / GALNT2 (1q42.13)ZNF664 (12q24.31) / GALNT2 (1q42.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)GALNT2   4124
Cards
Entrez_Gene (NCBI)GALNT2    polypeptide N-acetylgalactosaminyltransferase 2
AliasesCDG2T; GalNAc-T2
GeneCards (Weizmann)GALNT2
Ensembl hg19 (Hinxton)ENSG00000143641 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000143641 [Gene_View]  ENSG00000143641 [Sequence]  chr1:230067238-230282122 [Contig_View]  GALNT2 [Vega]
ICGC DataPortalENSG00000143641
TCGA cBioPortalGALNT2
AceView (NCBI)GALNT2
Genatlas (Paris)GALNT2
SOURCE (Princeton)GALNT2
Genetics Home Reference (NIH)GALNT2
Genomic and cartography
GoldenPath hg38 (UCSC)GALNT2  -     chr1:230067238-230282122 +  1q42.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GALNT2  -     1q42.13   [Description]    (hg19-Feb_2009)
GoldenPathGALNT2 - 1q42.13 [CytoView hg19]  GALNT2 - 1q42.13 [CytoView hg38]
ImmunoBaseENSG00000143641
Genome Data Viewer NCBIGALNT2 [Mapview hg19]  
OMIM602274   618885   
Gene and transcription
Genbank (Entrez)AK025845 AK056187 AK097996 AK098468 AK290048
RefSeq transcript (Entrez)NM_001291866 NM_004481
Consensus coding sequences : CCDS (NCBI)GALNT2
Gene ExpressionGALNT2 [ NCBI-GEO ]   GALNT2 [ EBI - ARRAY_EXPRESS ]   GALNT2 [ SEEK ]   GALNT2 [ MEM ]
Gene Expression Viewer (FireBrowse)GALNT2 [ Firebrowse - Broad ]
GenevisibleExpression of GALNT2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2590
GTEX Portal (Tissue expression)GALNT2
Human Protein AtlasENSG00000143641-GALNT2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ10471   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ10471  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ10471
PhosPhoSitePlusQ10471
Domaine pattern : Prosite (Expaxy)RICIN_B_LECTIN (PS50231)   
Domains : Interpro (EBI)Glyco_trans_2-like    Nucleotide-diphossugar_trans    Ricin_B-like_lectins    Ricin_B_lectin   
Domain families : Pfam (Sanger)Glycos_transf_2 (PF00535)    Ricin_B_lectin (PF00652)   
Domain families : Pfam (NCBI)pfam00535    pfam00652   
Domain families : Smart (EMBL)RICIN (SM00458)  
Conserved Domain (NCBI)GALNT2
PDB (RSDB)2FFU    2FFV    4D0T    4D0Z    4D11    5AJN    5AJO    5AJP    5FV9    5NDF    6E7I    6EGS    6NQT   
PDB Europe2FFU    2FFV    4D0T    4D0Z    4D11    5AJN    5AJO    5AJP    5FV9    5NDF    6E7I    6EGS    6NQT   
PDB (PDBSum)2FFU    2FFV    4D0T    4D0Z    4D11    5AJN    5AJO    5AJP    5FV9    5NDF    6E7I    6EGS    6NQT   
PDB (IMB)2FFU    2FFV    4D0T    4D0Z    4D11    5AJN    5AJO    5AJP    5FV9    5NDF    6E7I    6EGS    6NQT   
Structural Biology KnowledgeBase2FFU    2FFV    4D0T    4D0Z    4D11    5AJN    5AJO    5AJP    5FV9    5NDF    6E7I    6EGS    6NQT   
SCOP (Structural Classification of Proteins)2FFU    2FFV    4D0T    4D0Z    4D11    5AJN    5AJO    5AJP    5FV9    5NDF    6E7I    6EGS    6NQT   
CATH (Classification of proteins structures)2FFU    2FFV    4D0T    4D0Z    4D11    5AJN    5AJO    5AJP    5FV9    5NDF    6E7I    6EGS    6NQT   
SuperfamilyQ10471
AlphaFold pdb e-kbQ10471   
Human Protein Atlas [tissue]ENSG00000143641-GALNT2 [tissue]
HPRD03782
Protein Interaction databases
DIP (DOE-UCLA)Q10471
IntAct (EBI)Q10471
BioGRIDGALNT2
STRING (EMBL)GALNT2
ZODIACGALNT2
Ontologies - Pathways
QuickGOQ10471
Ontology : AmiGOGolgi membrane  polypeptide N-acetylgalactosaminyltransferase activity  protein binding  extracellular region  endoplasmic reticulum membrane  Golgi apparatus  Golgi apparatus  Golgi apparatus  Golgi stack  protein O-linked glycosylation  membrane  O-glycan processing  O-glycan processing  protein O-linked glycosylation via serine  protein O-linked glycosylation via threonine  manganese ion binding  integral component of Golgi membrane  carbohydrate binding  Golgi cisterna membrane  perinuclear region of cytoplasm  protein maturation  
Ontology : EGO-EBIGolgi membrane  polypeptide N-acetylgalactosaminyltransferase activity  protein binding  extracellular region  endoplasmic reticulum membrane  Golgi apparatus  Golgi apparatus  Golgi apparatus  Golgi stack  protein O-linked glycosylation  membrane  O-glycan processing  O-glycan processing  protein O-linked glycosylation via serine  protein O-linked glycosylation via threonine  manganese ion binding  integral component of Golgi membrane  carbohydrate binding  Golgi cisterna membrane  perinuclear region of cytoplasm  protein maturation  
Pathways : KEGGMucin type O-Glycan biosynthesis   
NDEx NetworkGALNT2
Atlas of Cancer Signalling NetworkGALNT2
Wikipedia pathwaysGALNT2
Orthology - Evolution
OrthoDB2590
GeneTree (enSembl)ENSG00000143641
Phylogenetic Trees/Animal Genes : TreeFamGALNT2
Homologs : HomoloGeneGALNT2
Homology/Alignments : Family Browser (UCSC)GALNT2
Gene fusions - Rearrangements
Fusion : QuiverGALNT2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGALNT2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GALNT2
dbVarGALNT2
ClinVarGALNT2
MonarchGALNT2
1000_GenomesGALNT2 
Exome Variant ServerGALNT2
GNOMAD BrowserENSG00000143641
Varsome BrowserGALNT2
ACMGGALNT2 variants
VarityQ10471
Genomic Variants (DGV)GALNT2 [DGVbeta]
DECIPHERGALNT2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGALNT2 
Mutations
ICGC Data PortalGALNT2 
TCGA Data PortalGALNT2 
Broad Tumor PortalGALNT2
OASIS PortalGALNT2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGALNT2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DGALNT2
Mutations and Diseases : HGMDGALNT2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaGALNT2
DgiDB (Drug Gene Interaction Database)GALNT2
DoCM (Curated mutations)GALNT2
CIViC (Clinical Interpretations of Variants in Cancer)GALNT2
Cancer3DGALNT2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602274    618885   
Orphanet
DisGeNETGALNT2
MedgenGALNT2
Genetic Testing Registry GALNT2
NextProtQ10471 [Medical]
GENETestsGALNT2
Target ValidationGALNT2
Huge Navigator GALNT2 [HugePedia]
ClinGenGALNT2
Clinical trials, drugs, therapy
MyCancerGenomeGALNT2
Protein Interactions : CTDGALNT2
Pharm GKB GenePA28537
PharosQ10471
Clinical trialGALNT2
Miscellaneous
canSAR (ICR)GALNT2
HarmonizomeGALNT2
DataMed IndexGALNT2
Probes
Litterature
PubMed108 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXGALNT2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:10:20 CEST 2021

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