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GALNT3 (polypeptide N-acetylgalactosaminyltransferase 3)

Identity

Other namesGalNAc-T3
HFTC
HHS
HGNC (Hugo) GALNT3
LocusID (NCBI) 2591
Location 2q24.3
Location_base_pair Starts at 166604313 and ends at 166650803 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)GALNT3   4125
Cards
Entrez_Gene (NCBI)GALNT3  2591  polypeptide N-acetylgalactosaminyltransferase 3
GeneCards (Weizmann)GALNT3
Ensembl (Hinxton)ENSG00000115339 [Gene_View]  chr2:166604313-166650803 [Contig_View]  GALNT3 [Vega]
ICGC DataPortalENSG00000115339
cBioPortalGALNT3
AceView (NCBI)GALNT3
Genatlas (Paris)GALNT3
WikiGenes2591
SOURCE (Princeton)NM_004482
Genomic and cartography
GoldenPath (UCSC)GALNT3  -  2q24.3   chr2:166604313-166650803 -  2q24.3   [Description]    (hg19-Feb_2009)
EnsemblGALNT3 - 2q24.3 [CytoView]
Mapping of homologs : NCBIGALNT3 [Mapview]
OMIM601756   
Gene and transcription
Genbank (Entrez)AJ505954 AK307391 AK313389 BC056246 BC113565
RefSeq transcript (Entrez)NM_004482
RefSeq genomic (Entrez)AC_000134 NC_000002 NC_018913 NG_012069 NT_005403 NW_001838860 NW_004929305
Consensus coding sequences : CCDS (NCBI)GALNT3
Cluster EST : UnigeneHs.170986 [ NCBI ]
CGAP (NCI)Hs.170986
Alternative Splicing : Fast-db (Paris)GSHG0018119
Alternative Splicing GalleryENSG00000115339
Gene ExpressionGALNT3 [ NCBI-GEO ]     GALNT3 [ SEEK ]   GALNT3 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14435 (Uniprot)
NextProtQ14435  [Medical]
With graphics : InterProQ14435
Splice isoforms : SwissVarQ14435 (Swissvar)
Catalytic activity : Enzyme2.4.1.41 [ Enzyme-Expasy ]   2.4.1.412.4.1.41 [ IntEnz-EBI ]   2.4.1.41 [ BRENDA ]   2.4.1.41 [ KEGG ]   
Domaine pattern : Prosite (Expaxy)RICIN_B_LECTIN (PS50231)   
Domains : Interpro (EBI)Glyco_trans_2-like [organisation]   Nucleotide-diphossugar_trans [organisation]   Ricin_B_lectin [organisation]  
Related proteins : CluSTrQ14435
Domain families : Pfam (Sanger)Glycos_transf_2 (PF00535)    Ricin_B_lectin (PF00652)   
Domain families : Pfam (NCBI)pfam00535    pfam00652   
Domain families : Smart (EMBL)RICIN (SM00458)  
DMDM Disease mutations2591
Blocks (Seattle)Q14435
Human Protein AtlasENSG00000115339 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ14435
HPRD03453
IPIIPI00004670   IPI00456483   IPI00916614   IPI00915981   IPI00915831   IPI00953363   IPI00917195   IPI00916473   IPI00916334   
Protein Interaction databases
DIP (DOE-UCLA)Q14435
IntAct (EBI)Q14435
FunCoupENSG00000115339
BioGRIDGALNT3
InParanoidQ14435
Interologous Interaction database Q14435
IntegromeDBGALNT3
STRING (EMBL)GALNT3
Ontologies - Pathways
Ontology : AmiGOGolgi membrane  polypeptide N-acetylgalactosaminyltransferase activity  calcium ion binding  Golgi apparatus  carbohydrate metabolic process  membrane  integral component of membrane  O-glycan processing  protein O-linked glycosylation via serine  protein O-linked glycosylation via threonine  manganese ion binding  Golgi cisterna membrane  post-translational protein modification  cellular protein metabolic process  perinuclear region of cytoplasm  
Ontology : EGO-EBIGolgi membrane  polypeptide N-acetylgalactosaminyltransferase activity  calcium ion binding  Golgi apparatus  carbohydrate metabolic process  membrane  integral component of membrane  O-glycan processing  protein O-linked glycosylation via serine  protein O-linked glycosylation via threonine  manganese ion binding  Golgi cisterna membrane  post-translational protein modification  cellular protein metabolic process  perinuclear region of cytoplasm  
Pathways : KEGGMucin type O-Glycan biosynthesis   
Protein Interaction DatabaseGALNT3
Wikipedia pathwaysGALNT3
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)GALNT3
snp3D : Map Gene to Disease2591
SNP (GeneSNP Utah)GALNT3
SNP : HGBaseGALNT3
Genetic variants : HAPMAPGALNT3
Exome VariantGALNT3
1000_GenomesGALNT3 
ICGC programENSG00000115339 
Somatic Mutations in Cancer : COSMICGALNT3 
CONAN: Copy Number AnalysisGALNT3 
Mutations and Diseases : HGMDGALNT3
Mutations and Diseases : intOGenGALNT3
Genomic VariantsGALNT3  GALNT3 [DGVbeta]
dbVarGALNT3
ClinVarGALNT3
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM601756   
MedgenGALNT3
GENETestsGALNT3
Disease Genetic AssociationGALNT3
Huge Navigator GALNT3 [HugePedia]  GALNT3 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneGALNT3
Homology/Alignments : Family Browser (UCSC)GALNT3
Phylogenetic Trees/Animal Genes : TreeFamGALNT3
Chemical/Protein Interactions : CTD2591
Chemical/Pharm GKB GenePA28538
Clinical trialGALNT3
Cancer Resource (Charite)ENSG00000115339
Other databases
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
CoreMineGALNT3
iHOPGALNT3
OncoSearchGALNT3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 22 18:52:35 CEST 2014

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