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GALNT4 (polypeptide N-acetylgalactosaminyltransferase 4)

Identity

Alias (NCBI)GALNAC-T4
GALNACT4
HGNC (Hugo) GALNT4
HGNC Alias symbGalNAc-T4
HGNC Alias namepolypeptide GalNAc transferase 4
HGNC Previous nameUDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4 (GalNAc-T4)
LocusID (NCBI) 8693
Atlas_Id 53817
Location 12q21.33  [Link to chromosome band 12q21]
Location_base_pair Starts at 89519413 and ends at 89524796 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)GALNT4   4126
Cards
Entrez_Gene (NCBI)GALNT4    polypeptide N-acetylgalactosaminyltransferase 4
AliasesGALNAC-T4; GALNACT4
GeneCards (Weizmann)GALNT4
Ensembl hg19 (Hinxton)ENSG00000257594 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000257594 [Gene_View]  ENSG00000257594 [Sequence]  chr12:89519413-89524796 [Contig_View]  GALNT4 [Vega]
ICGC DataPortalENSG00000257594
TCGA cBioPortalGALNT4
AceView (NCBI)GALNT4
Genatlas (Paris)GALNT4
SOURCE (Princeton)GALNT4
Genetics Home Reference (NIH)GALNT4
Genomic and cartography
GoldenPath hg38 (UCSC)GALNT4  -     chr12:89519413-89524796 -  12q21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GALNT4  -     12q21.33   [Description]    (hg19-Feb_2009)
GoldenPathGALNT4 - 12q21.33 [CytoView hg19]  GALNT4 - 12q21.33 [CytoView hg38]
ImmunoBaseENSG00000257594
genome Data Viewer NCBIGALNT4 [Mapview hg19]  
OMIM603565   
Gene and transcription
Genbank (Entrez)AK026150 AK026438 AK312870 AW835269 BC036390
RefSeq transcript (Entrez)NM_003774
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GALNT4
Alternative Splicing GalleryENSG00000257594
Gene ExpressionGALNT4 [ NCBI-GEO ]   GALNT4 [ EBI - ARRAY_EXPRESS ]   GALNT4 [ SEEK ]   GALNT4 [ MEM ]
Gene Expression Viewer (FireBrowse)GALNT4 [ Firebrowse - Broad ]
GenevisibleExpression of GALNT4 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8693
GTEX Portal (Tissue expression)GALNT4
Human Protein AtlasENSG00000257594-GALNT4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N4A0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N4A0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N4A0
Splice isoforms : SwissVarQ8N4A0
PhosPhoSitePlusQ8N4A0
Domaine pattern : Prosite (Expaxy)RICIN_B_LECTIN (PS50231)   
Domains : Interpro (EBI)Glyco_trans_2-like    Nucleotide-diphossugar_trans    Ricin_B-like_lectins    Ricin_B_lectin   
Domain families : Pfam (Sanger)Glycos_transf_2 (PF00535)    Ricin_B_lectin (PF00652)   
Domain families : Pfam (NCBI)pfam00535    pfam00652   
Domain families : Smart (EMBL)RICIN (SM00458)  
Conserved Domain (NCBI)GALNT4
Blocks (Seattle)GALNT4
PDB (RSDB)5NQA    6H0B   
PDB Europe5NQA    6H0B   
PDB (PDBSum)5NQA    6H0B   
PDB (IMB)5NQA    6H0B   
Structural Biology KnowledgeBase5NQA    6H0B   
SCOP (Structural Classification of Proteins)5NQA    6H0B   
CATH (Classification of proteins structures)5NQA    6H0B   
SuperfamilyQ8N4A0
Human Protein Atlas [tissue]ENSG00000257594-GALNT4 [tissue]
Peptide AtlasQ8N4A0
HPRD09152
IPIIPI00339297   
Protein Interaction databases
DIP (DOE-UCLA)Q8N4A0
IntAct (EBI)Q8N4A0
BioGRIDGALNT4
STRING (EMBL)GALNT4
ZODIACGALNT4
Ontologies - Pathways
QuickGOQ8N4A0
Ontology : AmiGOGolgi membrane  polypeptide N-acetylgalactosaminyltransferase activity  protein binding  Golgi apparatus  integral component of membrane  O-glycan processing  protein phosphopantetheinylation  protein O-linked glycosylation via serine  protein O-linked glycosylation via threonine  manganese ion binding  carbohydrate binding  perinuclear region of cytoplasm  extracellular exosome  
Ontology : EGO-EBIGolgi membrane  polypeptide N-acetylgalactosaminyltransferase activity  protein binding  Golgi apparatus  integral component of membrane  O-glycan processing  protein phosphopantetheinylation  protein O-linked glycosylation via serine  protein O-linked glycosylation via threonine  manganese ion binding  carbohydrate binding  perinuclear region of cytoplasm  extracellular exosome  
Pathways : KEGGMucin type O-Glycan biosynthesis   
NDEx NetworkGALNT4
Atlas of Cancer Signalling NetworkGALNT4
Wikipedia pathwaysGALNT4
Orthology - Evolution
OrthoDB8693
GeneTree (enSembl)ENSG00000257594
Phylogenetic Trees/Animal Genes : TreeFamGALNT4
HOGENOMQ8N4A0
Homologs : HomoloGeneGALNT4
Homology/Alignments : Family Browser (UCSC)GALNT4
Gene fusions - Rearrangements
Fusion : QuiverGALNT4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGALNT4 [hg38]
dbVarGALNT4
ClinVarGALNT4
MonarchGALNT4
1000_GenomesGALNT4 
Exome Variant ServerGALNT4
GNOMAD BrowserENSG00000257594
Varsome BrowserGALNT4
Genomic Variants (DGV)GALNT4 [DGVbeta]
DECIPHERGALNT4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGALNT4 
Mutations
ICGC Data PortalGALNT4 
TCGA Data PortalGALNT4 
Broad Tumor PortalGALNT4
OASIS PortalGALNT4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGALNT4  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DGALNT4
Mutations and Diseases : HGMDGALNT4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GALNT4
DgiDB (Drug Gene Interaction Database)GALNT4
DoCM (Curated mutations)GALNT4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GALNT4 (select a term)
intoGenGALNT4
Cancer3DGALNT4(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603565   
Orphanet
DisGeNETGALNT4
MedgenGALNT4
Genetic Testing Registry GALNT4
NextProtQ8N4A0 [Medical]
GENETestsGALNT4
Target ValidationGALNT4
Huge Navigator GALNT4 [HugePedia]
ClinGenGALNT4
Clinical trials, drugs, therapy
MyCancerGenomeGALNT4
Protein Interactions : CTD
Pharm GKB GenePA28539
PharosQ8N4A0
Clinical trialGALNT4
Miscellaneous
canSAR (ICR)GALNT4 (select the gene name)
HarmonizomeGALNT4
DataMed IndexGALNT4
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXGALNT4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 25 19:22:35 CET 2021

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