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GALNT4 (polypeptide N-acetylgalactosaminyltransferase 4)

Identity

Alias_namesUDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4 (GalNAc-T4)
Alias_symbol (synonym)GalNAc-T4
Other aliasGALNAC-T4
GALNACT4
HGNC (Hugo) GALNT4
LocusID (NCBI) 8693
Atlas_Id 53817
Location 12q21.33  [Link to chromosome band 12q21]
Location_base_pair Starts at 89913190 and ends at 89918583 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GALNT4   4126
Cards
Entrez_Gene (NCBI)GALNT4  8693  polypeptide N-acetylgalactosaminyltransferase 4
AliasesGALNAC-T4; GALNACT4
GeneCards (Weizmann)GALNT4
Ensembl hg19 (Hinxton)ENSG00000257594 [Gene_View]  chr12:89913190-89918583 [Contig_View]  GALNT4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000257594 [Gene_View]  chr12:89913190-89918583 [Contig_View]  GALNT4 [Vega]
ICGC DataPortalENSG00000257594
TCGA cBioPortalGALNT4
AceView (NCBI)GALNT4
Genatlas (Paris)GALNT4
WikiGenes8693
SOURCE (Princeton)GALNT4
Genetics Home Reference (NIH)GALNT4
Genomic and cartography
GoldenPath hg19 (UCSC)GALNT4  -     chr12:89913190-89918583 -  12q21.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GALNT4  -     12q21.33   [Description]    (hg38-Dec_2013)
EnsemblGALNT4 - 12q21.33 [CytoView hg19]  GALNT4 - 12q21.33 [CytoView hg38]
Mapping of homologs : NCBIGALNT4 [Mapview hg19]  GALNT4 [Mapview hg38]
OMIM603565   
Gene and transcription
Genbank (Entrez)AK026150 AK026438 AK312870 AW835269 BC036390
RefSeq transcript (Entrez)NM_003774
RefSeq genomic (Entrez)NC_000012 NC_018923 NG_041783 NT_029419 NW_004929384
Consensus coding sequences : CCDS (NCBI)GALNT4
Cluster EST : UnigeneHs.25130 [ NCBI ]
CGAP (NCI)Hs.25130
Alternative Splicing GalleryENSG00000257594
Gene ExpressionGALNT4 [ NCBI-GEO ]   GALNT4 [ EBI - ARRAY_EXPRESS ]   GALNT4 [ SEEK ]   GALNT4 [ MEM ]
Gene Expression Viewer (FireBrowse)GALNT4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8693
GTEX Portal (Tissue expression)GALNT4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N4A0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N4A0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N4A0
Splice isoforms : SwissVarQ8N4A0
Catalytic activity : Enzyme2.4.1.41 [ Enzyme-Expasy ]   2.4.1.412.4.1.41 [ IntEnz-EBI ]   2.4.1.41 [ BRENDA ]   2.4.1.41 [ KEGG ]   
PhosPhoSitePlusQ8N4A0
Domaine pattern : Prosite (Expaxy)RICIN_B_LECTIN (PS50231)   
Domains : Interpro (EBI)Glyco_trans_2-like    Nucleotide-diphossugar_trans    Ricin_B_lectin   
Domain families : Pfam (Sanger)Glycos_transf_2 (PF00535)    Ricin_B_lectin (PF00652)   
Domain families : Pfam (NCBI)pfam00535    pfam00652   
Domain families : Smart (EMBL)RICIN (SM00458)  
Conserved Domain (NCBI)GALNT4
DMDM Disease mutations8693
Blocks (Seattle)GALNT4
SuperfamilyQ8N4A0
Human Protein AtlasENSG00000257594
Peptide AtlasQ8N4A0
HPRD09152
IPIIPI00339297   
Protein Interaction databases
DIP (DOE-UCLA)Q8N4A0
IntAct (EBI)Q8N4A0
FunCoupENSG00000257594
BioGRIDGALNT4
STRING (EMBL)GALNT4
ZODIACGALNT4
Ontologies - Pathways
QuickGOQ8N4A0
Ontology : AmiGOGolgi membrane  polypeptide N-acetylgalactosaminyltransferase activity  Golgi apparatus  carbohydrate metabolic process  integral component of membrane  O-glycan processing  carbohydrate binding  metal ion binding  perinuclear region of cytoplasm  extracellular exosome  
Ontology : EGO-EBIGolgi membrane  polypeptide N-acetylgalactosaminyltransferase activity  Golgi apparatus  carbohydrate metabolic process  integral component of membrane  O-glycan processing  carbohydrate binding  metal ion binding  perinuclear region of cytoplasm  extracellular exosome  
Pathways : KEGGMucin type O-Glycan biosynthesis   
NDEx NetworkGALNT4
Atlas of Cancer Signalling NetworkGALNT4
Wikipedia pathwaysGALNT4
Orthology - Evolution
OrthoDB8693
GeneTree (enSembl)ENSG00000257594
Phylogenetic Trees/Animal Genes : TreeFamGALNT4
HOVERGENQ8N4A0
HOGENOMQ8N4A0
Homologs : HomoloGeneGALNT4
Homology/Alignments : Family Browser (UCSC)GALNT4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGALNT4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GALNT4
dbVarGALNT4
ClinVarGALNT4
1000_GenomesGALNT4 
Exome Variant ServerGALNT4
ExAC (Exome Aggregation Consortium)GALNT4 (select the gene name)
Genetic variants : HAPMAP8693
Genomic Variants (DGV)GALNT4 [DGVbeta]
DECIPHER (Syndromes)12:89913190-89918583  ENSG00000257594
CONAN: Copy Number AnalysisGALNT4 
Mutations
ICGC Data PortalGALNT4 
TCGA Data PortalGALNT4 
Broad Tumor PortalGALNT4
OASIS PortalGALNT4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGALNT4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGALNT4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GALNT4
DgiDB (Drug Gene Interaction Database)GALNT4
DoCM (Curated mutations)GALNT4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GALNT4 (select a term)
intoGenGALNT4
Cancer3DGALNT4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603565   
Orphanet
MedgenGALNT4
Genetic Testing Registry GALNT4
NextProtQ8N4A0 [Medical]
TSGene8693
GENETestsGALNT4
Huge Navigator GALNT4 [HugePedia]
snp3D : Map Gene to Disease8693
BioCentury BCIQGALNT4
ClinGenGALNT4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8693
Chemical/Pharm GKB GenePA28539
Clinical trialGALNT4
Miscellaneous
canSAR (ICR)GALNT4 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGALNT4
EVEXGALNT4
GoPubMedGALNT4
iHOPGALNT4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:07:02 CET 2017

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