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GALNT5 (polypeptide N-acetylgalactosaminyltransferase 5)

Identity

Alias_namesUDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)
Alias_symbol (synonym)GalNAc-T5
Other aliasGALNAC-T5
GALNACT5
HGNC (Hugo) GALNT5
LocusID (NCBI) 11227
Atlas_Id 53942
Location 2q24.1  [Link to chromosome band 2q24]
Location_base_pair Starts at 157257598 and ends at 157318489 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PABPC4 (1p34.3) / GALNT5 (2q24.1)PAPOLA (14q32.2) / GALNT5 (2q24.1)PAPOLA 14q32.2 / GALNT5 2q24.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GALNT5   4127
Cards
Entrez_Gene (NCBI)GALNT5  11227  polypeptide N-acetylgalactosaminyltransferase 5
AliasesGALNAC-T5; GALNACT5
GeneCards (Weizmann)GALNT5
Ensembl hg19 (Hinxton)ENSG00000136542 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000136542 [Gene_View]  chr2:157257598-157318489 [Contig_View]  GALNT5 [Vega]
ICGC DataPortalENSG00000136542
TCGA cBioPortalGALNT5
AceView (NCBI)GALNT5
Genatlas (Paris)GALNT5
WikiGenes11227
SOURCE (Princeton)GALNT5
Genetics Home Reference (NIH)GALNT5
Genomic and cartography
GoldenPath hg38 (UCSC)GALNT5  -     chr2:157257598-157318489 +  2q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GALNT5  -     2q24.1   [Description]    (hg19-Feb_2009)
EnsemblGALNT5 - 2q24.1 [CytoView hg19]  GALNT5 - 2q24.1 [CytoView hg38]
Mapping of homologs : NCBIGALNT5 [Mapview hg19]  GALNT5 [Mapview hg38]
OMIM615129   
Gene and transcription
Genbank (Entrez)AF154107 AJ245539 AJ505956 AK292154 AY277591
RefSeq transcript (Entrez)NM_001329868 NM_014568
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GALNT5
Cluster EST : UnigeneHs.560932 [ NCBI ]
CGAP (NCI)Hs.560932
Alternative Splicing GalleryENSG00000136542
Gene ExpressionGALNT5 [ NCBI-GEO ]   GALNT5 [ EBI - ARRAY_EXPRESS ]   GALNT5 [ SEEK ]   GALNT5 [ MEM ]
Gene Expression Viewer (FireBrowse)GALNT5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11227
GTEX Portal (Tissue expression)GALNT5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z7M9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z7M9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z7M9
Splice isoforms : SwissVarQ7Z7M9
Catalytic activity : Enzyme2.4.1.41 [ Enzyme-Expasy ]   2.4.1.412.4.1.41 [ IntEnz-EBI ]   2.4.1.41 [ BRENDA ]   2.4.1.41 [ KEGG ]   
PhosPhoSitePlusQ7Z7M9
Domaine pattern : Prosite (Expaxy)RICIN_B_LECTIN (PS50231)   
Domains : Interpro (EBI)Glyco_trans_2-like    Nucleotide-diphossugar_trans    Ricin_B_lectin   
Domain families : Pfam (Sanger)Glycos_transf_2 (PF00535)    Ricin_B_lectin (PF00652)   
Domain families : Pfam (NCBI)pfam00535    pfam00652   
Domain families : Smart (EMBL)RICIN (SM00458)  
Conserved Domain (NCBI)GALNT5
DMDM Disease mutations11227
Blocks (Seattle)GALNT5
SuperfamilyQ7Z7M9
Human Protein AtlasENSG00000136542
Peptide AtlasQ7Z7M9
HPRD09970
IPIIPI00005401   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z7M9
IntAct (EBI)Q7Z7M9
FunCoupENSG00000136542
BioGRIDGALNT5
STRING (EMBL)GALNT5
ZODIACGALNT5
Ontologies - Pathways
QuickGOQ7Z7M9
Ontology : AmiGOGolgi membrane  polypeptide N-acetylgalactosaminyltransferase activity  polypeptide N-acetylgalactosaminyltransferase activity  cellular_component  glycosaminoglycan biosynthetic process  integral component of membrane  O-glycan processing  carbohydrate binding  metal ion binding  
Ontology : EGO-EBIGolgi membrane  polypeptide N-acetylgalactosaminyltransferase activity  polypeptide N-acetylgalactosaminyltransferase activity  cellular_component  glycosaminoglycan biosynthetic process  integral component of membrane  O-glycan processing  carbohydrate binding  metal ion binding  
Pathways : KEGGMucin type O-Glycan biosynthesis   
NDEx NetworkGALNT5
Atlas of Cancer Signalling NetworkGALNT5
Wikipedia pathwaysGALNT5
Orthology - Evolution
OrthoDB11227
GeneTree (enSembl)ENSG00000136542
Phylogenetic Trees/Animal Genes : TreeFamGALNT5
HOVERGENQ7Z7M9
HOGENOMQ7Z7M9
Homologs : HomoloGeneGALNT5
Homology/Alignments : Family Browser (UCSC)GALNT5
Gene fusions - Rearrangements
Fusion : MitelmanPAPOLA/GALNT5 [14q32.2/2q24.1]  [t(2;14)(q24;q32)]  
Fusion: TCGAPAPOLA 14q32.2 GALNT5 2q24.1 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGALNT5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GALNT5
dbVarGALNT5
ClinVarGALNT5
1000_GenomesGALNT5 
Exome Variant ServerGALNT5
ExAC (Exome Aggregation Consortium)GALNT5 (select the gene name)
Genetic variants : HAPMAP11227
Genomic Variants (DGV)GALNT5 [DGVbeta]
DECIPHERGALNT5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGALNT5 
Mutations
ICGC Data PortalGALNT5 
TCGA Data PortalGALNT5 
Broad Tumor PortalGALNT5
OASIS PortalGALNT5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGALNT5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGALNT5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GALNT5
DgiDB (Drug Gene Interaction Database)GALNT5
DoCM (Curated mutations)GALNT5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GALNT5 (select a term)
intoGenGALNT5
Cancer3DGALNT5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615129   
Orphanet
MedgenGALNT5
Genetic Testing Registry GALNT5
NextProtQ7Z7M9 [Medical]
TSGene11227
GENETestsGALNT5
Target ValidationGALNT5
Huge Navigator GALNT5 [HugePedia]
snp3D : Map Gene to Disease11227
BioCentury BCIQGALNT5
ClinGenGALNT5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11227
Chemical/Pharm GKB GenePA28540
Clinical trialGALNT5
Miscellaneous
canSAR (ICR)GALNT5 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGALNT5
EVEXGALNT5
GoPubMedGALNT5
iHOPGALNT5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:34:49 CEST 2017

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