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GALNT8 (polypeptide N-acetylgalactosaminyltransferase 8)

Identity

Alias_namesUDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 8 (GalNAc-T8)
Alias_symbol (synonym)GALNAC-T8
Other alias
HGNC (Hugo) GALNT8
LocusID (NCBI) 26290
Atlas_Id 63689
Location 12p13.32  [Link to chromosome band 12p13]
Location_base_pair Starts at 4720586 and ends at 4772726 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GALNT8 (12p13.32) / CHD4 (12p13.31)GALNT8 (12p13.32) / PRMT8 (12p13.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GALNT8   4130
Cards
Entrez_Gene (NCBI)GALNT8  26290  polypeptide N-acetylgalactosaminyltransferase 8
AliasesGALNAC-T8
GeneCards (Weizmann)GALNT8
Ensembl hg19 (Hinxton)ENSG00000130035 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000130035 [Gene_View]  chr12:4720586-4772726 [Contig_View]  GALNT8 [Vega]
ICGC DataPortalENSG00000130035
TCGA cBioPortalGALNT8
AceView (NCBI)GALNT8
Genatlas (Paris)GALNT8
WikiGenes26290
SOURCE (Princeton)GALNT8
Genetics Home Reference (NIH)GALNT8
Genomic and cartography
GoldenPath hg38 (UCSC)GALNT8  -     chr12:4720586-4772726 +  12p13.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GALNT8  -     12p13.32   [Description]    (hg19-Feb_2009)
EnsemblGALNT8 - 12p13.32 [CytoView hg19]  GALNT8 - 12p13.32 [CytoView hg38]
Mapping of homologs : NCBIGALNT8 [Mapview hg19]  GALNT8 [Mapview hg38]
OMIM606250   
Gene and transcription
Genbank (Entrez)AJ271385 AJ505959 BC140888 BC140889
RefSeq transcript (Entrez)NM_017417
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GALNT8
Cluster EST : UnigeneHs.511985 [ NCBI ]
CGAP (NCI)Hs.511985
Alternative Splicing GalleryENSG00000130035
Gene ExpressionGALNT8 [ NCBI-GEO ]   GALNT8 [ EBI - ARRAY_EXPRESS ]   GALNT8 [ SEEK ]   GALNT8 [ MEM ]
Gene Expression Viewer (FireBrowse)GALNT8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26290
GTEX Portal (Tissue expression)GALNT8
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NY28   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NY28  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NY28
Splice isoforms : SwissVarQ9NY28
Catalytic activity : Enzyme2.4.1.41 [ Enzyme-Expasy ]   2.4.1.412.4.1.41 [ IntEnz-EBI ]   2.4.1.41 [ BRENDA ]   2.4.1.41 [ KEGG ]   
PhosPhoSitePlusQ9NY28
Domaine pattern : Prosite (Expaxy)RICIN_B_LECTIN (PS50231)   
Domains : Interpro (EBI)Glyco_trans_2-like    Nucleotide-diphossugar_trans    Ricin_B_lectin   
Domain families : Pfam (Sanger)Glycos_transf_2 (PF00535)    Ricin_B_lectin (PF00652)   
Domain families : Pfam (NCBI)pfam00535    pfam00652   
Domain families : Smart (EMBL)RICIN (SM00458)  
Conserved Domain (NCBI)GALNT8
DMDM Disease mutations26290
Blocks (Seattle)GALNT8
SuperfamilyQ9NY28
Human Protein AtlasENSG00000130035
Peptide AtlasQ9NY28
HPRD09374
IPIIPI00010101   IPI01010717   IPI01009444   
Protein Interaction databases
DIP (DOE-UCLA)Q9NY28
IntAct (EBI)Q9NY28
FunCoupENSG00000130035
BioGRIDGALNT8
STRING (EMBL)GALNT8
ZODIACGALNT8
Ontologies - Pathways
QuickGOQ9NY28
Ontology : AmiGOGolgi membrane  polypeptide N-acetylgalactosaminyltransferase activity  integral component of membrane  O-glycan processing  carbohydrate binding  intracellular membrane-bounded organelle  metal ion binding  
Ontology : EGO-EBIGolgi membrane  polypeptide N-acetylgalactosaminyltransferase activity  integral component of membrane  O-glycan processing  carbohydrate binding  intracellular membrane-bounded organelle  metal ion binding  
Pathways : KEGGMucin type O-Glycan biosynthesis   
NDEx NetworkGALNT8
Atlas of Cancer Signalling NetworkGALNT8
Wikipedia pathwaysGALNT8
Orthology - Evolution
OrthoDB26290
GeneTree (enSembl)ENSG00000130035
Phylogenetic Trees/Animal Genes : TreeFamGALNT8
HOVERGENQ9NY28
HOGENOMQ9NY28
Homologs : HomoloGeneGALNT8
Homology/Alignments : Family Browser (UCSC)GALNT8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGALNT8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GALNT8
dbVarGALNT8
ClinVarGALNT8
1000_GenomesGALNT8 
Exome Variant ServerGALNT8
ExAC (Exome Aggregation Consortium)GALNT8 (select the gene name)
Genetic variants : HAPMAP26290
Genomic Variants (DGV)GALNT8 [DGVbeta]
DECIPHERGALNT8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGALNT8 
Mutations
ICGC Data PortalGALNT8 
TCGA Data PortalGALNT8 
Broad Tumor PortalGALNT8
OASIS PortalGALNT8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGALNT8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGALNT8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GALNT8
DgiDB (Drug Gene Interaction Database)GALNT8
DoCM (Curated mutations)GALNT8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GALNT8 (select a term)
intoGenGALNT8
Cancer3DGALNT8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606250   
Orphanet
MedgenGALNT8
Genetic Testing Registry GALNT8
NextProtQ9NY28 [Medical]
TSGene26290
GENETestsGALNT8
Target ValidationGALNT8
Huge Navigator GALNT8 [HugePedia]
snp3D : Map Gene to Disease26290
BioCentury BCIQGALNT8
ClinGenGALNT8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26290
Chemical/Pharm GKB GenePA28543
Clinical trialGALNT8
Miscellaneous
canSAR (ICR)GALNT8 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGALNT8
EVEXGALNT8
GoPubMedGALNT8
iHOPGALNT8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:50:15 CEST 2017

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