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GALNTL5 (polypeptide N-acetylgalactosaminyltransferase-like 5)

Identity

Alias_namesGALNT15
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 15
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5
Alias_symbol (synonym)GalNAc-T5L
Other aliasGALNACT19
HGNC (Hugo) GALNTL5
LocusID (NCBI) 168391
Atlas_Id 63691
Location 7q36.1  [Link to chromosome band 7q36]
Location_base_pair Starts at 151653464 and ends at 151717019 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
KMT2C (7q36.1) / GALNTL5 (7q36.1)TRAF3IP1 (2q37.3) / GALNTL5 (7q36.1)TRAF3IP1 GALNTL5
MLL3 GALNTL5

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GALNTL5   21725
Cards
Entrez_Gene (NCBI)GALNTL5  168391  polypeptide N-acetylgalactosaminyltransferase-like 5
AliasesGALNACT19; GALNT15; GalNAc-T5L
GeneCards (Weizmann)GALNTL5
Ensembl hg19 (Hinxton)ENSG00000106648 [Gene_View]  chr7:151653464-151717019 [Contig_View]  GALNTL5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000106648 [Gene_View]  chr7:151653464-151717019 [Contig_View]  GALNTL5 [Vega]
ICGC DataPortalENSG00000106648
TCGA cBioPortalGALNTL5
AceView (NCBI)GALNTL5
Genatlas (Paris)GALNTL5
WikiGenes168391
SOURCE (Princeton)GALNTL5
Genetics Home Reference (NIH)GALNTL5
Genomic and cartography
GoldenPath hg19 (UCSC)GALNTL5  -     chr7:151653464-151717019 +  7q36.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GALNTL5  -     7q36.1   [Description]    (hg38-Dec_2013)
EnsemblGALNTL5 - 7q36.1 [CytoView hg19]  GALNTL5 - 7q36.1 [CytoView hg38]
Mapping of homologs : NCBIGALNTL5 [Mapview hg19]  GALNTL5 [Mapview hg38]
OMIM615133   
Gene and transcription
Genbank (Entrez)AF440400 AF440404 AK093091 AK315667 AW103179
RefSeq transcript (Entrez)NM_145292
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929333
Consensus coding sequences : CCDS (NCBI)GALNTL5
Cluster EST : UnigeneHs.647077 [ NCBI ]
CGAP (NCI)Hs.647077
Alternative Splicing GalleryENSG00000106648
Gene ExpressionGALNTL5 [ NCBI-GEO ]   GALNTL5 [ EBI - ARRAY_EXPRESS ]   GALNTL5 [ SEEK ]   GALNTL5 [ MEM ]
Gene Expression Viewer (FireBrowse)GALNTL5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)168391
GTEX Portal (Tissue expression)GALNTL5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z4T8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z4T8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z4T8
Splice isoforms : SwissVarQ7Z4T8
PhosPhoSitePlusQ7Z4T8
Domains : Interpro (EBI)Glyco_trans_2-like    Nucleotide-diphossugar_trans   
Domain families : Pfam (Sanger)Glycos_transf_2 (PF00535)   
Domain families : Pfam (NCBI)pfam00535   
Conserved Domain (NCBI)GALNTL5
DMDM Disease mutations168391
Blocks (Seattle)GALNTL5
SuperfamilyQ7Z4T8
Human Protein AtlasENSG00000106648
Peptide AtlasQ7Z4T8
HPRD13565
IPIIPI00103179   IPI00456725   IPI00925764   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z4T8
IntAct (EBI)Q7Z4T8
FunCoupENSG00000106648
BioGRIDGALNTL5
STRING (EMBL)GALNTL5
ZODIACGALNTL5
Ontologies - Pathways
QuickGOQ7Z4T8
Ontology : AmiGOprotein glycosylation  spermatid development  integral component of membrane  transferase activity, transferring glycosyl groups  late endosome membrane  metal ion binding  
Ontology : EGO-EBIprotein glycosylation  spermatid development  integral component of membrane  transferase activity, transferring glycosyl groups  late endosome membrane  metal ion binding  
Pathways : KEGGMucin type O-Glycan biosynthesis   
NDEx NetworkGALNTL5
Atlas of Cancer Signalling NetworkGALNTL5
Wikipedia pathwaysGALNTL5
Orthology - Evolution
OrthoDB168391
GeneTree (enSembl)ENSG00000106648
Phylogenetic Trees/Animal Genes : TreeFamGALNTL5
HOVERGENQ7Z4T8
HOGENOMQ7Z4T8
Homologs : HomoloGeneGALNTL5
Homology/Alignments : Family Browser (UCSC)GALNTL5
Gene fusions - Rearrangements
Fusion: TCGATRAF3IP1 GALNTL5
Fusion: TCGAMLL3 GALNTL5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGALNTL5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GALNTL5
dbVarGALNTL5
ClinVarGALNTL5
1000_GenomesGALNTL5 
Exome Variant ServerGALNTL5
ExAC (Exome Aggregation Consortium)GALNTL5 (select the gene name)
Genetic variants : HAPMAP168391
Genomic Variants (DGV)GALNTL5 [DGVbeta]
DECIPHER (Syndromes)7:151653464-151717019  ENSG00000106648
CONAN: Copy Number AnalysisGALNTL5 
Mutations
ICGC Data PortalGALNTL5 
TCGA Data PortalGALNTL5 
Broad Tumor PortalGALNTL5
OASIS PortalGALNTL5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGALNTL5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGALNTL5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GALNTL5
DgiDB (Drug Gene Interaction Database)GALNTL5
DoCM (Curated mutations)GALNTL5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GALNTL5 (select a term)
intoGenGALNTL5
Cancer3DGALNTL5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615133   
Orphanet
MedgenGALNTL5
Genetic Testing Registry GALNTL5
NextProtQ7Z4T8 [Medical]
TSGene168391
GENETestsGALNTL5
Huge Navigator GALNTL5 [HugePedia]
snp3D : Map Gene to Disease168391
BioCentury BCIQGALNTL5
ClinGenGALNTL5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD168391
Chemical/Pharm GKB GenePA134934705
Clinical trialGALNTL5
Miscellaneous
canSAR (ICR)GALNTL5 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGALNTL5
EVEXGALNTL5
GoPubMedGALNTL5
iHOPGALNTL5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:05:46 CET 2017

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