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GALNTL5 (polypeptide N-acetylgalactosaminyltransferase like 5)

Identity

Alias (NCBI)GALNACT19
GALNT15
GalNAc-T5L
HGNC (Hugo) GALNTL5
HGNC Alias symbGalNAc-T5L
HGNC Alias namepolypeptide GalNAc transferase-like 5
HGNC Previous nameGALNT15
HGNC Previous nameUDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 15
 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5
LocusID (NCBI) 168391
Atlas_Id 63691
Location 7q36.1  [Link to chromosome band 7q36]
Location_base_pair Starts at 151956446 and ends at 152019929 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
KMT2C (7q36.1)::GALNTL5 (7q36.1)TRAF3IP1 (2q37.3)::GALNTL5 (7q36.1)TRAF3IP1 GALNTL5
MLL3 GALNTL5

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)GALNTL5   21725
Cards
Entrez_Gene (NCBI)GALNTL5    polypeptide N-acetylgalactosaminyltransferase like 5
AliasesGALNACT19; GALNT15; GalNAc-T5L
GeneCards (Weizmann)GALNTL5
Ensembl hg19 (Hinxton)ENSG00000106648 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000106648 [Gene_View]  ENSG00000106648 [Sequence]  chr7:151956446-152019929 [Contig_View]  GALNTL5 [Vega]
ICGC DataPortalENSG00000106648
TCGA cBioPortalGALNTL5
AceView (NCBI)GALNTL5
Genatlas (Paris)GALNTL5
SOURCE (Princeton)GALNTL5
Genetics Home Reference (NIH)GALNTL5
Genomic and cartography
GoldenPath hg38 (UCSC)GALNTL5  -     chr7:151956446-152019929 +  7q36.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GALNTL5  -     7q36.1   [Description]    (hg19-Feb_2009)
GoldenPathGALNTL5 - 7q36.1 [CytoView hg19]  GALNTL5 - 7q36.1 [CytoView hg38]
ImmunoBaseENSG00000106648
Genome Data Viewer NCBIGALNTL5 [Mapview hg19]  
OMIM615133   
Gene and transcription
Genbank (Entrez)AF440400 AF440404 AK093091 AK315667 AW103179
RefSeq transcript (Entrez)NM_145292
Consensus coding sequences : CCDS (NCBI)GALNTL5
Gene ExpressionGALNTL5 [ NCBI-GEO ]   GALNTL5 [ EBI - ARRAY_EXPRESS ]   GALNTL5 [ SEEK ]   GALNTL5 [ MEM ]
Gene Expression Viewer (FireBrowse)GALNTL5 [ Firebrowse - Broad ]
GenevisibleExpression of GALNTL5 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)168391
GTEX Portal (Tissue expression)GALNTL5
Human Protein AtlasENSG00000106648-GALNTL5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z4T8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z4T8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z4T8
PhosPhoSitePlusQ7Z4T8
Domains : Interpro (EBI)Glyco_trans_2-like    Nucleotide-diphossugar_trans   
Domain families : Pfam (Sanger)Glycos_transf_2 (PF00535)   
Domain families : Pfam (NCBI)pfam00535   
Conserved Domain (NCBI)GALNTL5
SuperfamilyQ7Z4T8
AlphaFold pdb e-kbQ7Z4T8   
Human Protein Atlas [tissue]ENSG00000106648-GALNTL5 [tissue]
HPRD13565
Protein Interaction databases
DIP (DOE-UCLA)Q7Z4T8
IntAct (EBI)Q7Z4T8
BioGRIDGALNTL5
STRING (EMBL)GALNTL5
ZODIACGALNTL5
Ontologies - Pathways
QuickGOQ7Z4T8
Ontology : AmiGOGolgi apparatus  protein glycosylation  spermatid development  spermatid development  integral component of membrane  glycosyltransferase activity  late endosome membrane  metal ion binding  
Ontology : EGO-EBIGolgi apparatus  protein glycosylation  spermatid development  spermatid development  integral component of membrane  glycosyltransferase activity  late endosome membrane  metal ion binding  
Pathways : KEGGKEGG_hsa00051 Fructose and mannose metabolism    KEGG_hsa00561 Glycerolipid metabolism    KEGG_hsa01031 Glycan structures - biosynthesis 2   
NDEx NetworkGALNTL5
Atlas of Cancer Signalling NetworkGALNTL5
Wikipedia pathwaysGALNTL5
Orthology - Evolution
OrthoDB168391
GeneTree (enSembl)ENSG00000106648
Phylogenetic Trees/Animal Genes : TreeFamGALNTL5
Homologs : HomoloGeneGALNTL5
Homology/Alignments : Family Browser (UCSC)GALNTL5
Gene fusions - Rearrangements
Fusion : QuiverGALNTL5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGALNTL5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GALNTL5
dbVarGALNTL5
ClinVarGALNTL5
MonarchGALNTL5
1000_GenomesGALNTL5 
Exome Variant ServerGALNTL5
GNOMAD BrowserENSG00000106648
Varsome BrowserGALNTL5
ACMGGALNTL5 variants
VarityQ7Z4T8
Genomic Variants (DGV)GALNTL5 [DGVbeta]
DECIPHERGALNTL5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGALNTL5 
Mutations
ICGC Data PortalGALNTL5 
TCGA Data PortalGALNTL5 
Broad Tumor PortalGALNTL5
OASIS PortalGALNTL5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGALNTL5  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DGALNTL5
Mutations and Diseases : HGMDGALNTL5
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaGALNTL5
DgiDB (Drug Gene Interaction Database)GALNTL5
DoCM (Curated mutations)GALNTL5
CIViC (Clinical Interpretations of Variants in Cancer)GALNTL5
Cancer3DGALNTL5
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615133   
Orphanet
DisGeNETGALNTL5
MedgenGALNTL5
Genetic Testing Registry GALNTL5
NextProtQ7Z4T8 [Medical]
GENETestsGALNTL5
Target ValidationGALNTL5
Huge Navigator GALNTL5 [HugePedia]
ClinGenGALNTL5
Clinical trials, drugs, therapy
MyCancerGenomeGALNTL5
Protein Interactions : CTDGALNTL5
Pharm GKB GenePA134934705
PharosQ7Z4T8
Clinical trialGALNTL5
Miscellaneous
canSAR (ICR)GALNTL5
HarmonizomeGALNTL5
ARCHS4GALNTL5
DataMed IndexGALNTL5
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXGALNTL5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jan 20 13:20:08 CET 2022

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