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GALNTL6 (polypeptide N-acetylgalactosaminyltransferase-like 6)

Identity

Alias_namesUDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6
Alias_symbol (synonym)GALNT17
GalNAc-T6L
Other aliasGALNACT20
HGNC (Hugo) GALNTL6
LocusID (NCBI) 442117
Atlas_Id 63692
Location 4q34.1  [Link to chromosome band 4q34]
Location_base_pair Starts at 171813424 and ends at 173040407 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CBR4 (4q32.3) / GALNTL6 (4q34.1)DNAJA1 (9p21.1) / GALNTL6 (4q34.1)RASAL2 (1q25.2) / GALNTL6 (4q34.1)
VEGFC (4q34.3) / GALNTL6 (4q34.1)DNAJA1 GALNTL6RASAL2 GALNTL6
CBR4 GALNTL6

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GALNTL6   33844
Cards
Entrez_Gene (NCBI)GALNTL6  442117  polypeptide N-acetylgalactosaminyltransferase-like 6
AliasesGALNACT20; GALNT17; GalNAc-T6L
GeneCards (Weizmann)GALNTL6
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr4:171813424-173040407 [Contig_View]  GALNTL6 [Vega]
TCGA cBioPortalGALNTL6
AceView (NCBI)GALNTL6
Genatlas (Paris)GALNTL6
WikiGenes442117
SOURCE (Princeton)GALNTL6
Genetics Home Reference (NIH)GALNTL6
Genomic and cartography
GoldenPath hg38 (UCSC)GALNTL6  -     chr4:171813424-173040407 +  4q34.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GALNTL6  -     4q34.1   [Description]    (hg19-Feb_2009)
EnsemblGALNTL6 - 4q34.1 [CytoView hg19]  GALNTL6 - 4q34.1 [CytoView hg38]
Mapping of homologs : NCBIGALNTL6 [Mapview hg19]  GALNTL6 [Mapview hg38]
OMIM615138   
Gene and transcription
Genbank (Entrez)AJ626725 AK124240 AK295464 BC044793 BC047551
RefSeq transcript (Entrez)NM_001034845
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GALNTL6
Cluster EST : UnigeneHs.386236 [ NCBI ]
CGAP (NCI)Hs.386236
Gene ExpressionGALNTL6 [ NCBI-GEO ]   GALNTL6 [ EBI - ARRAY_EXPRESS ]   GALNTL6 [ SEEK ]   GALNTL6 [ MEM ]
Gene Expression Viewer (FireBrowse)GALNTL6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)442117
GTEX Portal (Tissue expression)GALNTL6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ49A17   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ49A17  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ49A17
Splice isoforms : SwissVarQ49A17
Catalytic activity : Enzyme2.4.1.41 [ Enzyme-Expasy ]   2.4.1.412.4.1.41 [ IntEnz-EBI ]   2.4.1.41 [ BRENDA ]   2.4.1.41 [ KEGG ]   
PhosPhoSitePlusQ49A17
Domaine pattern : Prosite (Expaxy)RICIN_B_LECTIN (PS50231)   
Domains : Interpro (EBI)Glyco_trans_2-like    Nucleotide-diphossugar_trans    Ricin_B_lectin   
Domain families : Pfam (Sanger)Glycos_transf_2 (PF00535)    Ricin_B_lectin (PF00652)   
Domain families : Pfam (NCBI)pfam00535    pfam00652   
Domain families : Smart (EMBL)RICIN (SM00458)  
Conserved Domain (NCBI)GALNTL6
DMDM Disease mutations442117
Blocks (Seattle)GALNTL6
SuperfamilyQ49A17
Peptide AtlasQ49A17
IPIIPI00454894   IPI00888755   IPI00910400   IPI00964878   
Protein Interaction databases
DIP (DOE-UCLA)Q49A17
IntAct (EBI)Q49A17
BioGRIDGALNTL6
STRING (EMBL)GALNTL6
ZODIACGALNTL6
Ontologies - Pathways
QuickGOQ49A17
Ontology : AmiGOGolgi membrane  polypeptide N-acetylgalactosaminyltransferase activity  protein glycosylation  integral component of membrane  carbohydrate binding  metal ion binding  
Ontology : EGO-EBIGolgi membrane  polypeptide N-acetylgalactosaminyltransferase activity  protein glycosylation  integral component of membrane  carbohydrate binding  metal ion binding  
Pathways : KEGGMucin type O-Glycan biosynthesis   
NDEx NetworkGALNTL6
Atlas of Cancer Signalling NetworkGALNTL6
Wikipedia pathwaysGALNTL6
Orthology - Evolution
OrthoDB442117
Phylogenetic Trees/Animal Genes : TreeFamGALNTL6
HOVERGENQ49A17
HOGENOMQ49A17
Homologs : HomoloGeneGALNTL6
Homology/Alignments : Family Browser (UCSC)GALNTL6
Gene fusions - Rearrangements
Fusion: TCGADNAJA1 GALNTL6
Fusion: TCGARASAL2 GALNTL6
Fusion: TCGACBR4 GALNTL6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGALNTL6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GALNTL6
dbVarGALNTL6
ClinVarGALNTL6
1000_GenomesGALNTL6 
Exome Variant ServerGALNTL6
ExAC (Exome Aggregation Consortium)GALNTL6 (select the gene name)
Genetic variants : HAPMAP442117
Genomic Variants (DGV)GALNTL6 [DGVbeta]
DECIPHERGALNTL6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGALNTL6 
Mutations
ICGC Data PortalGALNTL6 
TCGA Data PortalGALNTL6 
Broad Tumor PortalGALNTL6
OASIS PortalGALNTL6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGALNTL6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGALNTL6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GALNTL6
DgiDB (Drug Gene Interaction Database)GALNTL6
DoCM (Curated mutations)GALNTL6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GALNTL6 (select a term)
intoGenGALNTL6
Cancer3DGALNTL6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615138   
Orphanet
MedgenGALNTL6
Genetic Testing Registry GALNTL6
NextProtQ49A17 [Medical]
TSGene442117
GENETestsGALNTL6
Target ValidationGALNTL6
Huge Navigator GALNTL6 [HugePedia]
snp3D : Map Gene to Disease442117
BioCentury BCIQGALNTL6
ClinGenGALNTL6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD442117
Chemical/Pharm GKB GenePA164720162
Clinical trialGALNTL6
Miscellaneous
canSAR (ICR)GALNTL6 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGALNTL6
EVEXGALNTL6
GoPubMedGALNTL6
iHOPGALNTL6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:16:00 CEST 2017

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