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GALNTL6 (polypeptide N-acetylgalactosaminyltransferase like 6)

Identity

Alias (NCBI)GALNACT20
GALNT17
GalNAc-T6L
HGNC (Hugo) GALNTL6
HGNC Alias symbGALNT17
GalNAc-T6L
HGNC Alias namepolypeptide GalNAc transferase-like 6
HGNC Previous nameUDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6
LocusID (NCBI) 442117
Atlas_Id 63692
Location 4q34.1  [Link to chromosome band 4q34]
Location_base_pair Starts at 171813404 and ends at 173041559 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CBR4 (4q32.3)::GALNTL6 (4q34.1)DNAJA1 (9p21.1)::GALNTL6 (4q34.1)RASAL2 (1q25.2)::GALNTL6 (4q34.1)
VEGFC (4q34.3)::GALNTL6 (4q34.1)DNAJA1 GALNTL6RASAL2 GALNTL6
CBR4 GALNTL6

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)GALNTL6   33844
Cards
Entrez_Gene (NCBI)GALNTL6    polypeptide N-acetylgalactosaminyltransferase like 6
AliasesGALNACT20; GALNT17; GalNAc-T6L
GeneCards (Weizmann)GALNTL6
Ensembl hg19 (Hinxton)ENSG00000174473 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000174473 [Gene_View]  ENSG00000174473 [Sequence]  chr4:171813404-173041559 [Contig_View]  GALNTL6 [Vega]
ICGC DataPortalENSG00000174473
TCGA cBioPortalGALNTL6
AceView (NCBI)GALNTL6
Genatlas (Paris)GALNTL6
SOURCE (Princeton)GALNTL6
Genetics Home Reference (NIH)GALNTL6
Genomic and cartography
GoldenPath hg38 (UCSC)GALNTL6  -     chr4:171813404-173041559 +  4q34.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GALNTL6  -     4q34.1   [Description]    (hg19-Feb_2009)
GoldenPathGALNTL6 - 4q34.1 [CytoView hg19]  GALNTL6 - 4q34.1 [CytoView hg38]
ImmunoBaseENSG00000174473
Genome Data Viewer NCBIGALNTL6 [Mapview hg19]  
OMIM615138   
Gene and transcription
Genbank (Entrez)AJ626725 AK124240 AK295464 BC044793 BC047551
RefSeq transcript (Entrez)NM_001034845
Consensus coding sequences : CCDS (NCBI)GALNTL6
Gene ExpressionGALNTL6 [ NCBI-GEO ]   GALNTL6 [ EBI - ARRAY_EXPRESS ]   GALNTL6 [ SEEK ]   GALNTL6 [ MEM ]
Gene Expression Viewer (FireBrowse)GALNTL6 [ Firebrowse - Broad ]
GenevisibleExpression of GALNTL6 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)442117
GTEX Portal (Tissue expression)GALNTL6
Human Protein AtlasENSG00000174473-GALNTL6 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ49A17   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ49A17  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ49A17
Catalytic activity : Enzyme2.4.1.41 [ Enzyme-Expasy ]   2.4.1.412.4.1.41 [ IntEnz-EBI ]   2.4.1.41 [ BRENDA ]   2.4.1.41 [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusQ49A17
Domaine pattern : Prosite (Expaxy)RICIN_B_LECTIN (PS50231)   
Domains : Interpro (EBI)Glyco_trans_2-like    Nucleotide-diphossugar_trans    Ricin_B-like_lectins    Ricin_B_lectin   
Domain families : Pfam (Sanger)Glycos_transf_2 (PF00535)    Ricin_B_lectin (PF00652)   
Domain families : Pfam (NCBI)pfam00535    pfam00652   
Domain families : Smart (EMBL)RICIN (SM00458)  
Conserved Domain (NCBI)GALNTL6
SuperfamilyQ49A17
AlphaFold pdb e-kbQ49A17   
Human Protein Atlas [tissue]ENSG00000174473-GALNTL6 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q49A17
IntAct (EBI)Q49A17
BioGRIDGALNTL6
STRING (EMBL)GALNTL6
ZODIACGALNTL6
Ontologies - Pathways
QuickGOQ49A17
Ontology : AmiGOGolgi membrane  polypeptide N-acetylgalactosaminyltransferase activity  Golgi apparatus  integral component of membrane  protein O-linked glycosylation via threonine  carbohydrate binding  metal ion binding  
Ontology : EGO-EBIGolgi membrane  polypeptide N-acetylgalactosaminyltransferase activity  Golgi apparatus  integral component of membrane  protein O-linked glycosylation via threonine  carbohydrate binding  metal ion binding  
Pathways : KEGGKEGG_hsa01030 Glycan structures - biosynthesis 1    KEGG_hsa00512 O-Glycan biosynthesis   
NDEx NetworkGALNTL6
Atlas of Cancer Signalling NetworkGALNTL6
Wikipedia pathwaysGALNTL6
Orthology - Evolution
OrthoDB442117
GeneTree (enSembl)ENSG00000174473
Phylogenetic Trees/Animal Genes : TreeFamGALNTL6
Homologs : HomoloGeneGALNTL6
Homology/Alignments : Family Browser (UCSC)GALNTL6
Gene fusions - Rearrangements
Fusion : QuiverGALNTL6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGALNTL6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GALNTL6
dbVarGALNTL6
ClinVarGALNTL6
MonarchGALNTL6
1000_GenomesGALNTL6 
Exome Variant ServerGALNTL6
GNOMAD BrowserENSG00000174473
Varsome BrowserGALNTL6
ACMGGALNTL6 variants
VarityQ49A17
Genomic Variants (DGV)GALNTL6 [DGVbeta]
DECIPHERGALNTL6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGALNTL6 
Mutations
ICGC Data PortalGALNTL6 
TCGA Data PortalGALNTL6 
Broad Tumor PortalGALNTL6
OASIS PortalGALNTL6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGALNTL6  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DGALNTL6
Mutations and Diseases : HGMDGALNTL6
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaGALNTL6
DgiDB (Drug Gene Interaction Database)GALNTL6
DoCM (Curated mutations)GALNTL6
CIViC (Clinical Interpretations of Variants in Cancer)GALNTL6
Cancer3DGALNTL6
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615138   
Orphanet
DisGeNETGALNTL6
MedgenGALNTL6
Genetic Testing Registry GALNTL6
NextProtQ49A17 [Medical]
GENETestsGALNTL6
Target ValidationGALNTL6
Huge Navigator GALNTL6 [HugePedia]
ClinGenGALNTL6
Clinical trials, drugs, therapy
MyCancerGenomeGALNTL6
Protein Interactions : CTDGALNTL6
Pharm GKB GenePA164720162
PharosQ49A17
Clinical trialGALNTL6
Miscellaneous
canSAR (ICR)GALNTL6
HarmonizomeGALNTL6
ARCHS4GALNTL6
DataMed IndexGALNTL6
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXGALNTL6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jan 20 13:20:08 CET 2022

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