GALNTL6 (polypeptide N-acetylgalactosaminyltransferase like 6)

2014-11-01  

Identity

HGNC
GALNTL6
LOCATION
4q34.1
LOCUSID
442117
ALIAS
GALNACT20,GALNT17,GalNAc-T6L
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 442117
MIM: 615138
HGNC: 33844
Ensembl: ENSG00000174473

Variants:

dbSNP: 442117
ClinVar: 442117
TCGA: ENSG00000174473
COSMIC: GALNTL6

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000174473ENST00000506823Q49A17
ENSG00000174473ENST00000506823E5D8G0
ENSG00000174473ENST00000508122Q49A17
ENSG00000174473ENST00000511251D6RCP4
ENSG00000174473ENST00000616459A0A087X115

Expression (GTEx)

0
1
2
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Pathways

PathwaySourceExternal ID
Mucin type O-glycan biosynthesisKEGGko00512
Mucin type O-glycan biosynthesisKEGGhsa00512
Metabolic pathwaysKEGGhsa01100
O-glycan biosynthesis, mucin type coreKEGGhsa_M00056
O-glycan biosynthesis, mucin type coreKEGGM00056
Metabolism of proteinsREACTOMER-HSA-392499
Post-translational protein modificationREACTOMER-HSA-597592
O-linked glycosylationREACTOMER-HSA-5173105
O-linked glycosylation of mucinsREACTOMER-HSA-913709

Protein levels (Protein atlas)

Not detected
Low
Medium
High
N/A

References

Pubmed IDYearTitleCitations
185198262008Molecular genetics of successful smoking cessation: convergent genome-wide association study results.130
203796142010Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score.62
209778862010Identification of a novel human UDP-GalNAc transferase with unique catalytic activity and expression profile.0

Citation

Dessen P

GALNTL6 (polypeptide N-acetylgalactosaminyltransferase like 6)

Atlas Genet Cytogenet Oncol Haematol. 2014-11-01

Online version: http://atlasgeneticsoncology.org/gene/63692/galntl6