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GALR1 (galanin receptor 1)

Identity

Alias_namesGALNR1
GALNR
Other alias
HGNC (Hugo) GALR1
LocusID (NCBI) 2587
Atlas_Id 50690
Location 18q23  [Link to chromosome band 18q23]
Location_base_pair Starts at 77250052 and ends at 77270140 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GALR1   4132
Cards
Entrez_Gene (NCBI)GALR1  2587  galanin receptor 1
AliasesGALNR; GALNR1
GeneCards (Weizmann)GALR1
Ensembl hg19 (Hinxton)ENSG00000166573 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166573 [Gene_View]  chr18:77250052-77270140 [Contig_View]  GALR1 [Vega]
ICGC DataPortalENSG00000166573
TCGA cBioPortalGALR1
AceView (NCBI)GALR1
Genatlas (Paris)GALR1
WikiGenes2587
SOURCE (Princeton)GALR1
Genetics Home Reference (NIH)GALR1
Genomic and cartography
GoldenPath hg38 (UCSC)GALR1  -     chr18:77250052-77270140 +  18q23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GALR1  -     18q23   [Description]    (hg19-Feb_2009)
EnsemblGALR1 - 18q23 [CytoView hg19]  GALR1 - 18q23 [CytoView hg38]
Mapping of homologs : NCBIGALR1 [Mapview hg19]  GALR1 [Mapview hg38]
OMIM600377   
Gene and transcription
Genbank (Entrez)AY541036 BC095530 L34339 U23854 U53511
RefSeq transcript (Entrez)NM_001480
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GALR1
Cluster EST : UnigeneHs.272191 [ NCBI ]
CGAP (NCI)Hs.272191
Alternative Splicing GalleryENSG00000166573
Gene ExpressionGALR1 [ NCBI-GEO ]   GALR1 [ EBI - ARRAY_EXPRESS ]   GALR1 [ SEEK ]   GALR1 [ MEM ]
Gene Expression Viewer (FireBrowse)GALR1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2587
GTEX Portal (Tissue expression)GALR1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP47211   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP47211  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP47211
Splice isoforms : SwissVarP47211
PhosPhoSitePlusP47211
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GAL1_rcpt    Galanin_rcpt    GPCR_Rhodpsn    GPCR_Rhodpsn_7TM   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
Domain families : Smart (EMBL)7TM_GPCR_Srsx (SM01381)  
Conserved Domain (NCBI)GALR1
DMDM Disease mutations2587
Blocks (Seattle)GALR1
SuperfamilyP47211
Human Protein AtlasENSG00000166573
Peptide AtlasP47211
HPRD02657
IPIIPI00306781   
Protein Interaction databases
DIP (DOE-UCLA)P47211
IntAct (EBI)P47211
FunCoupENSG00000166573
BioGRIDGALR1
STRING (EMBL)GALR1
ZODIACGALR1
Ontologies - Pathways
QuickGOP47211
Ontology : AmiGOgalanin receptor activity  protein binding  plasma membrane  integral component of plasma membrane  adenylate cyclase-activating G-protein coupled receptor signaling pathway  negative regulation of adenylate cyclase activity  phospholipase C-activating G-protein coupled receptor signaling pathway  positive regulation of cytosolic calcium ion concentration  neuropeptide signaling pathway  digestion  integral component of membrane  peptide hormone binding  neuropeptide binding  positive regulation of transcription from RNA polymerase II promoter  positive regulation of cortisol secretion  
Ontology : EGO-EBIgalanin receptor activity  protein binding  plasma membrane  integral component of plasma membrane  adenylate cyclase-activating G-protein coupled receptor signaling pathway  negative regulation of adenylate cyclase activity  phospholipase C-activating G-protein coupled receptor signaling pathway  positive regulation of cytosolic calcium ion concentration  neuropeptide signaling pathway  digestion  integral component of membrane  peptide hormone binding  neuropeptide binding  positive regulation of transcription from RNA polymerase II promoter  positive regulation of cortisol secretion  
Pathways : KEGGNeuroactive ligand-receptor interaction   
NDEx NetworkGALR1
Atlas of Cancer Signalling NetworkGALR1
Wikipedia pathwaysGALR1
Orthology - Evolution
OrthoDB2587
GeneTree (enSembl)ENSG00000166573
Phylogenetic Trees/Animal Genes : TreeFamGALR1
HOVERGENP47211
HOGENOMP47211
Homologs : HomoloGeneGALR1
Homology/Alignments : Family Browser (UCSC)GALR1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGALR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GALR1
dbVarGALR1
ClinVarGALR1
1000_GenomesGALR1 
Exome Variant ServerGALR1
ExAC (Exome Aggregation Consortium)GALR1 (select the gene name)
Genetic variants : HAPMAP2587
Genomic Variants (DGV)GALR1 [DGVbeta]
DECIPHERGALR1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGALR1 
Mutations
ICGC Data PortalGALR1 
TCGA Data PortalGALR1 
Broad Tumor PortalGALR1
OASIS PortalGALR1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGALR1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGALR1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GALR1
DgiDB (Drug Gene Interaction Database)GALR1
DoCM (Curated mutations)GALR1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GALR1 (select a term)
intoGenGALR1
Cancer3DGALR1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600377   
Orphanet
MedgenGALR1
Genetic Testing Registry GALR1
NextProtP47211 [Medical]
TSGene2587
GENETestsGALR1
Target ValidationGALR1
Huge Navigator GALR1 [HugePedia]
snp3D : Map Gene to Disease2587
BioCentury BCIQGALR1
ClinGenGALR1 (curated)
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2587
Chemical/Pharm GKB GenePA28545
Clinical trialGALR1
Miscellaneous
canSAR (ICR)GALR1 (select the gene name)
Probes
Litterature
PubMed36 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGALR1
EVEXGALR1
GoPubMedGALR1
iHOPGALR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:34:50 CEST 2017

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