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GALT (galactose-1-phosphate uridylyltransferase)

Identity

Other names-
HGNC (Hugo) GALT
LocusID (NCBI) 2592
Location 9p13.3
Location_base_pair Starts at 34646586 and ends at 34650595 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)GALT   4135
Cards
Entrez_Gene (NCBI)GALT  2592  galactose-1-phosphate uridylyltransferase
GeneCards (Weizmann)GALT
Ensembl (Hinxton)ENSG00000213930 [Gene_View]  chr9:34646586-34650595 [Contig_View]  GALT [Vega]
AceView (NCBI)GALT
Genatlas (Paris)GALT
WikiGenes2592
SOURCE (Princeton)NM_000155 NM_001258332
Genomic and cartography
GoldenPath (UCSC)GALT  -  9p13.3   chr9:34646586-34650595 +  9p13.3   [Description]    (hg19-Feb_2009)
EnsemblGALT - 9p13.3 [CytoView]
Mapping of homologs : NCBIGALT [Mapview]
OMIM230400   606999   
Gene and transcription
Genbank (Entrez)AI292159 AK096026 AK096137 AK293212 AK300070
RefSeq transcript (Entrez)NM_000155 NM_001258332
RefSeq genomic (Entrez)AC_000141 NC_000009 NC_018920 NG_009029 NT_008413 NW_001839149 NW_004929342
Consensus coding sequences : CCDS (NCBI)GALT
Cluster EST : UnigeneHs.522090 [ NCBI ]
CGAP (NCI)Hs.522090
Alternative Splicing : Fast-db (Paris)GSHG0030087
Alternative Splicing GalleryENSG00000213930
Gene ExpressionGALT [ NCBI-GEO ]     GALT [ SEEK ]   GALT [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP07902 (Uniprot)
NextProtP07902  [Medical]
With graphics : InterProP07902
Splice isoforms : SwissVarP07902 (Swissvar)
Catalytic activity : Enzyme2.7.7.12 [ Enzyme-Expasy ]   2.7.7.122.7.7.12 [ IntEnz-EBI ]   2.7.7.12 [ BRENDA ]   2.7.7.12 [ KEGG ]   
Domaine pattern : Prosite (Expaxy)GAL_P_UDP_TRANSF_I (PS00117)   
Domains : Interpro (EBI)GalP_UDPtransf1    GalP_UDPtransf1_His-AS    GalP_Utransf_C    GalP_Utransf_N    HIT-like   
Related proteins : CluSTrP07902
Domain families : Pfam (Sanger)GalP_UDP_tr_C (PF02744)    GalP_UDP_transf (PF01087)   
Domain families : Pfam (NCBI)pfam02744    pfam01087   
DMDM Disease mutations2592
Blocks (Seattle)P07902
PDB (SRS)1R3A   
PDB (PDBSum)1R3A   
PDB (IMB)1R3A   
PDB (RSDB)1R3A   
Human Protein AtlasENSG00000213930
Peptide AtlasP07902
HPRD06106
IPIIPI00013925   IPI01022887   IPI00941286   IPI00956379   IPI00969572   IPI00815821   IPI00982218   IPI01026394   IPI01025163   IPI01026289   
Protein Interaction databases
DIP (DOE-UCLA)P07902
IntAct (EBI)P07902
FunCoupENSG00000213930
BioGRIDGALT
InParanoidP07902
Interologous Interaction database P07902
IntegromeDBGALT
STRING (EMBL)GALT
Ontologies - Pathways
Ontology : AmiGOGolgi apparatus  cytosol  carbohydrate metabolic process  galactose metabolic process  UDP-glucose catabolic process  UDP-glucose:hexose-1-phosphate uridylyltransferase activity  zinc ion binding  galactose catabolic process  small molecule metabolic process  
Ontology : EGO-EBIGolgi apparatus  cytosol  carbohydrate metabolic process  galactose metabolic process  UDP-glucose catabolic process  UDP-glucose:hexose-1-phosphate uridylyltransferase activity  zinc ion binding  galactose catabolic process  small molecule metabolic process  
Pathways : BIOCARTALeloir pathway of galactose metabolism [Genes]   
Pathways : KEGGGalactose metabolism    Amino sugar and nucleotide sugar metabolism    Prolactin signaling pathway   
REACTOMEGALT
Protein Interaction DatabaseGALT
Wikipedia pathwaysGALT
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)GALT
SNP (GeneSNP Utah)GALT
SNP : HGBaseGALT
Genetic variants : HAPMAPGALT
1000_GenomesGALT 
ICGC programENSG00000213930 
Somatic Mutations in Cancer : COSMICGALT 
CONAN: Copy Number AnalysisGALT 
Mutations and Diseases : HGMDGALT
OMIM230400    606999   
GENETestsGALT
Disease Genetic AssociationGALT
Huge Navigator GALT [HugePedia]  GALT [HugeCancerGEM]
Genomic VariantsGALT  GALT [DGVbeta]
Exome VariantGALT
dbVarGALT
ClinVarGALT
snp3D : Map Gene to Disease2592
General knowledge
Homologs : HomoloGeneGALT
Homology/Alignments : Family Browser (UCSC)GALT
Phylogenetic Trees/Animal Genes : TreeFamGALT
Chemical/Protein Interactions : CTD2592
Chemical/Pharm GKB GenePA28548
Clinical trialGALT
Cancer Resource (Charite)ENSG00000213930
Other databases
Probes
Litterature
PubMed95 Pubmed reference(s) in Entrez
CoreMineGALT
iHOPGALT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Apr 18 17:04:08 CEST 2014

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