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GAPDHS (glyceraldehyde-3-phosphate dehydrogenase, spermatogenic)

Identity

Alias_namesGAPDS
Alias_symbol (synonym)GAPDH-2
GAPD2
Other aliasHEL-S-278
HSD-35
HGNC (Hugo) GAPDHS
LocusID (NCBI) 26330
Atlas_Id 45660
Location 19q13.12  [Link to chromosome band 19q13]
Location_base_pair Starts at 36024314 and ends at 36036221 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
NOP16 (5q35.2) / GAPDHS (19q13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GAPDHS   24864
Cards
Entrez_Gene (NCBI)GAPDHS  26330  glyceraldehyde-3-phosphate dehydrogenase, spermatogenic
AliasesGAPD2; GAPDH-2; GAPDS; HEL-S-278; 
HSD-35
GeneCards (Weizmann)GAPDHS
Ensembl hg19 (Hinxton)ENSG00000105679 [Gene_View]  chr19:36024314-36036221 [Contig_View]  GAPDHS [Vega]
Ensembl hg38 (Hinxton)ENSG00000105679 [Gene_View]  chr19:36024314-36036221 [Contig_View]  GAPDHS [Vega]
ICGC DataPortalENSG00000105679
TCGA cBioPortalGAPDHS
AceView (NCBI)GAPDHS
Genatlas (Paris)GAPDHS
WikiGenes26330
SOURCE (Princeton)GAPDHS
Genetics Home Reference (NIH)GAPDHS
Genomic and cartography
GoldenPath hg19 (UCSC)GAPDHS  -     chr19:36024314-36036221 +  19q13.12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GAPDHS  -     19q13.12   [Description]    (hg38-Dec_2013)
EnsemblGAPDHS - 19q13.12 [CytoView hg19]  GAPDHS - 19q13.12 [CytoView hg38]
Mapping of homologs : NCBIGAPDHS [Mapview hg19]  GAPDHS [Mapview hg38]
OMIM609169   
Gene and transcription
Genbank (Entrez)AJ005371 AK225727 AK314980 AY306129 BC036373
RefSeq transcript (Entrez)NM_014364
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)GAPDHS
Cluster EST : UnigeneHs.248017 [ NCBI ]
CGAP (NCI)Hs.248017
Alternative Splicing GalleryENSG00000105679
Gene ExpressionGAPDHS [ NCBI-GEO ]   GAPDHS [ EBI - ARRAY_EXPRESS ]   GAPDHS [ SEEK ]   GAPDHS [ MEM ]
Gene Expression Viewer (FireBrowse)GAPDHS [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26330
GTEX Portal (Tissue expression)GAPDHS
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14556   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14556  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14556
Splice isoforms : SwissVarO14556
Catalytic activity : Enzyme1.2.1.12 [ Enzyme-Expasy ]   1.2.1.121.2.1.12 [ IntEnz-EBI ]   1.2.1.12 [ BRENDA ]   1.2.1.12 [ KEGG ]   
PhosPhoSitePlusO14556
Domaine pattern : Prosite (Expaxy)GAPDH (PS00071)   
Domains : Interpro (EBI)GlycerAld/Erythrose_P_DH    GlycerAld_3-P_DH_AS    GlycerAld_3-P_DH_cat    GlycerAld_3-P_DH_NAD(P)-bd    Glyceraldehyde-3-P_DH_1    NAD(P)-bd_dom   
Domain families : Pfam (Sanger)Gp_dh_C (PF02800)    Gp_dh_N (PF00044)   
Domain families : Pfam (NCBI)pfam02800    pfam00044   
Domain families : Smart (EMBL)Gp_dh_N (SM00846)  
Conserved Domain (NCBI)GAPDHS
DMDM Disease mutations26330
Blocks (Seattle)GAPDHS
PDB (SRS)3H9E    3PFW   
PDB (PDBSum)3H9E    3PFW   
PDB (IMB)3H9E    3PFW   
PDB (RSDB)3H9E    3PFW   
Structural Biology KnowledgeBase3H9E    3PFW   
SCOP (Structural Classification of Proteins)3H9E    3PFW   
CATH (Classification of proteins structures)3H9E    3PFW   
SuperfamilyO14556
Human Protein AtlasENSG00000105679
Peptide AtlasO14556
HPRD13566
IPIIPI00022430   
Protein Interaction databases
DIP (DOE-UCLA)O14556
IntAct (EBI)O14556
FunCoupENSG00000105679
BioGRIDGAPDHS
STRING (EMBL)GAPDHS
ZODIACGAPDHS
Ontologies - Pathways
QuickGOO14556
Ontology : AmiGOglyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity  glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity  protein binding  nucleus  cytosol  gluconeogenesis  spermatid development  sperm motility  motile cilium  positive regulation of glycolytic process  NADP binding  NAD binding  canonical glycolysis  
Ontology : EGO-EBIglyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity  glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity  protein binding  nucleus  cytosol  gluconeogenesis  spermatid development  sperm motility  motile cilium  positive regulation of glycolytic process  NADP binding  NAD binding  canonical glycolysis  
Pathways : KEGGGlycolysis / Gluconeogenesis   
NDEx NetworkGAPDHS
Atlas of Cancer Signalling NetworkGAPDHS
Wikipedia pathwaysGAPDHS
Orthology - Evolution
OrthoDB26330
GeneTree (enSembl)ENSG00000105679
Phylogenetic Trees/Animal Genes : TreeFamGAPDHS
HOVERGENO14556
HOGENOMO14556
Homologs : HomoloGeneGAPDHS
Homology/Alignments : Family Browser (UCSC)GAPDHS
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGAPDHS [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GAPDHS
dbVarGAPDHS
ClinVarGAPDHS
1000_GenomesGAPDHS 
Exome Variant ServerGAPDHS
ExAC (Exome Aggregation Consortium)GAPDHS (select the gene name)
Genetic variants : HAPMAP26330
Genomic Variants (DGV)GAPDHS [DGVbeta]
DECIPHER (Syndromes)19:36024314-36036221  ENSG00000105679
CONAN: Copy Number AnalysisGAPDHS 
Mutations
ICGC Data PortalGAPDHS 
TCGA Data PortalGAPDHS 
Broad Tumor PortalGAPDHS
OASIS PortalGAPDHS [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGAPDHS  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGAPDHS
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GAPDHS
DgiDB (Drug Gene Interaction Database)GAPDHS
DoCM (Curated mutations)GAPDHS (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GAPDHS (select a term)
intoGenGAPDHS
Cancer3DGAPDHS(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609169   
Orphanet
MedgenGAPDHS
Genetic Testing Registry GAPDHS
NextProtO14556 [Medical]
TSGene26330
GENETestsGAPDHS
Huge Navigator GAPDHS [HugePedia]
snp3D : Map Gene to Disease26330
BioCentury BCIQGAPDHS
ClinGenGAPDHS
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26330
Chemical/Pharm GKB GenePA134934259
Clinical trialGAPDHS
Miscellaneous
canSAR (ICR)GAPDHS (select the gene name)
Probes
Litterature
PubMed37 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGAPDHS
EVEXGAPDHS
GoPubMedGAPDHS
iHOPGAPDHS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:07:04 CET 2017

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