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GAPT (GRB2 binding adaptor protein, transmembrane)

Identity

Alias_namesC5orf29
chromosome 5 open reading frame 29
Alias_symbol (synonym)FLJ33641
Other alias
HGNC (Hugo) GAPT
LocusID (NCBI) 202309
Atlas_Id 56072
Location 5q11.2  [Link to chromosome band 5q11]
Location_base_pair Starts at 58491435 and ends at 58496358 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GAPT   26588
Cards
Entrez_Gene (NCBI)GAPT  202309  GRB2 binding adaptor protein, transmembrane
AliasesC5orf29
GeneCards (Weizmann)GAPT
Ensembl hg19 (Hinxton)ENSG00000175857 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000175857 [Gene_View]  chr5:58491435-58496358 [Contig_View]  GAPT [Vega]
ICGC DataPortalENSG00000175857
TCGA cBioPortalGAPT
AceView (NCBI)GAPT
Genatlas (Paris)GAPT
WikiGenes202309
SOURCE (Princeton)GAPT
Genetics Home Reference (NIH)GAPT
Genomic and cartography
GoldenPath hg38 (UCSC)GAPT  -     chr5:58491435-58496358 +  5q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GAPT  -     5q11.2   [Description]    (hg19-Feb_2009)
EnsemblGAPT - 5q11.2 [CytoView hg19]  GAPT - 5q11.2 [CytoView hg38]
Mapping of homologs : NCBIGAPT [Mapview hg19]  GAPT [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA220230 AK090960 BC063534 DA008727 DA347824
RefSeq transcript (Entrez)NM_001304428 NM_001304429 NM_001304431 NM_152687
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GAPT
Cluster EST : UnigeneHs.547697 [ NCBI ]
CGAP (NCI)Hs.547697
Alternative Splicing GalleryENSG00000175857
Gene ExpressionGAPT [ NCBI-GEO ]   GAPT [ EBI - ARRAY_EXPRESS ]   GAPT [ SEEK ]   GAPT [ MEM ]
Gene Expression Viewer (FireBrowse)GAPT [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)202309
GTEX Portal (Tissue expression)GAPT
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N292   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N292  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N292
Splice isoforms : SwissVarQ8N292
PhosPhoSitePlusQ8N292
Domains : Interpro (EBI)Protein_GAPT   
Domain families : Pfam (Sanger)GAPT (PF11770)   
Domain families : Pfam (NCBI)pfam11770   
Conserved Domain (NCBI)GAPT
DMDM Disease mutations202309
Blocks (Seattle)GAPT
SuperfamilyQ8N292
Human Protein AtlasENSG00000175857
Peptide AtlasQ8N292
HPRD08161
IPIIPI00166344   IPI00964922   IPI00967492   
Protein Interaction databases
DIP (DOE-UCLA)Q8N292
IntAct (EBI)Q8N292
FunCoupENSG00000175857
BioGRIDGAPT
STRING (EMBL)GAPT
ZODIACGAPT
Ontologies - Pathways
QuickGOQ8N292
Ontology : AmiGOB cell homeostasis  B cell proliferation involved in immune response  immunoglobulin production involved in immunoglobulin mediated immune response  plasma membrane  integral component of membrane  
Ontology : EGO-EBIB cell homeostasis  B cell proliferation involved in immune response  immunoglobulin production involved in immunoglobulin mediated immune response  plasma membrane  integral component of membrane  
NDEx NetworkGAPT
Atlas of Cancer Signalling NetworkGAPT
Wikipedia pathwaysGAPT
Orthology - Evolution
OrthoDB202309
GeneTree (enSembl)ENSG00000175857
Phylogenetic Trees/Animal Genes : TreeFamGAPT
HOVERGENQ8N292
HOGENOMQ8N292
Homologs : HomoloGeneGAPT
Homology/Alignments : Family Browser (UCSC)GAPT
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGAPT [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GAPT
dbVarGAPT
ClinVarGAPT
1000_GenomesGAPT 
Exome Variant ServerGAPT
ExAC (Exome Aggregation Consortium)GAPT (select the gene name)
Genetic variants : HAPMAP202309
Genomic Variants (DGV)GAPT [DGVbeta]
DECIPHERGAPT [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGAPT 
Mutations
ICGC Data PortalGAPT 
TCGA Data PortalGAPT 
Broad Tumor PortalGAPT
OASIS PortalGAPT [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGAPT  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGAPT
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GAPT
DgiDB (Drug Gene Interaction Database)GAPT
DoCM (Curated mutations)GAPT (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GAPT (select a term)
intoGenGAPT
Cancer3DGAPT(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGAPT
Genetic Testing Registry GAPT
NextProtQ8N292 [Medical]
TSGene202309
GENETestsGAPT
Huge Navigator GAPT [HugePedia]
snp3D : Map Gene to Disease202309
BioCentury BCIQGAPT
ClinGenGAPT
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD202309
Chemical/Pharm GKB GenePA164720193
Clinical trialGAPT
Miscellaneous
canSAR (ICR)GAPT (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGAPT
EVEXGAPT
GoPubMedGAPT
iHOPGAPT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:16:53 CEST 2017

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