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GAR1 (GAR1 ribonucleoprotein)

Identity

Alias_namesNOLA1
nucleolar protein family A, member 1 (H/ACA small nucleolar RNPs)
GAR1 ribonucleoprotein homolog (yeast)
Other alias
HGNC (Hugo) GAR1
LocusID (NCBI) 54433
Atlas_Id 63699
Location 4q25  [Link to chromosome band 4q25]
Location_base_pair Starts at 109815510 and ends at 109824737 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GAR1   14264
Cards
Entrez_Gene (NCBI)GAR1  54433  GAR1 ribonucleoprotein
AliasesNOLA1
GeneCards (Weizmann)GAR1
Ensembl hg19 (Hinxton)ENSG00000109534 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000109534 [Gene_View]  chr4:109815510-109824737 [Contig_View]  GAR1 [Vega]
ICGC DataPortalENSG00000109534
TCGA cBioPortalGAR1
AceView (NCBI)GAR1
Genatlas (Paris)GAR1
WikiGenes54433
SOURCE (Princeton)GAR1
Genetics Home Reference (NIH)GAR1
Genomic and cartography
GoldenPath hg38 (UCSC)GAR1  -     chr4:109815510-109824737 +  4q25   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GAR1  -     4q25   [Description]    (hg19-Feb_2009)
EnsemblGAR1 - 4q25 [CytoView hg19]  GAR1 - 4q25 [CytoView hg38]
Mapping of homologs : NCBIGAR1 [Mapview hg19]  GAR1 [Mapview hg38]
OMIM606468   
Gene and transcription
Genbank (Entrez)AA311919 AJ276003 AK310489 AY780787 BC003413
RefSeq transcript (Entrez)NM_018983 NM_032993
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GAR1
Cluster EST : UnigeneHs.69851 [ NCBI ]
CGAP (NCI)Hs.69851
Alternative Splicing GalleryENSG00000109534
Gene ExpressionGAR1 [ NCBI-GEO ]   GAR1 [ EBI - ARRAY_EXPRESS ]   GAR1 [ SEEK ]   GAR1 [ MEM ]
Gene Expression Viewer (FireBrowse)GAR1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54433
GTEX Portal (Tissue expression)GAR1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NY12   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NY12  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NY12
Splice isoforms : SwissVarQ9NY12
PhosPhoSitePlusQ9NY12
Domains : Interpro (EBI)H/ACA_rnp_Gar1    H/ACA_rnp_Gar1/Naf1    Transl_B-barrel   
Domain families : Pfam (Sanger)Gar1 (PF04410)   
Domain families : Pfam (NCBI)pfam04410   
Domain structure : Prodom (Prabi Lyon)Gar1_RNA_bd (PD020235)   
Conserved Domain (NCBI)GAR1
DMDM Disease mutations54433
Blocks (Seattle)GAR1
SuperfamilyQ9NY12
Human Protein AtlasENSG00000109534
Peptide AtlasQ9NY12
HPRD07569
IPIIPI00302176   IPI00607820   
Protein Interaction databases
DIP (DOE-UCLA)Q9NY12
IntAct (EBI)Q9NY12
FunCoupENSG00000109534
BioGRIDGAR1
STRING (EMBL)GAR1
ZODIACGAR1
Ontologies - Pathways
QuickGOQ9NY12
Ontology : AmiGOsnoRNA guided rRNA pseudouridine synthesis  nuclear chromosome, telomeric region  nuclear chromosome, telomeric region  fibrillar center  RNA binding  protein binding  nucleus  nucleoplasm  telomerase holoenzyme complex  telomere maintenance via telomerase  rRNA pseudouridine synthesis  box H/ACA snoRNP complex  box H/ACA snoRNP complex  box H/ACA snoRNA binding  telomerase RNA binding  box H/ACA scaRNP complex  box H/ACA telomerase RNP complex  box H/ACA telomerase RNP complex  
Ontology : EGO-EBIsnoRNA guided rRNA pseudouridine synthesis  nuclear chromosome, telomeric region  nuclear chromosome, telomeric region  fibrillar center  RNA binding  protein binding  nucleus  nucleoplasm  telomerase holoenzyme complex  telomere maintenance via telomerase  rRNA pseudouridine synthesis  box H/ACA snoRNP complex  box H/ACA snoRNP complex  box H/ACA snoRNA binding  telomerase RNA binding  box H/ACA scaRNP complex  box H/ACA telomerase RNP complex  box H/ACA telomerase RNP complex  
Pathways : KEGGRibosome biogenesis in eukaryotes   
NDEx NetworkGAR1
Atlas of Cancer Signalling NetworkGAR1
Wikipedia pathwaysGAR1
Orthology - Evolution
OrthoDB54433
GeneTree (enSembl)ENSG00000109534
Phylogenetic Trees/Animal Genes : TreeFamGAR1
HOVERGENQ9NY12
HOGENOMQ9NY12
Homologs : HomoloGeneGAR1
Homology/Alignments : Family Browser (UCSC)GAR1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGAR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GAR1
dbVarGAR1
ClinVarGAR1
1000_GenomesGAR1 
Exome Variant ServerGAR1
ExAC (Exome Aggregation Consortium)GAR1 (select the gene name)
Genetic variants : HAPMAP54433
Genomic Variants (DGV)GAR1 [DGVbeta]
DECIPHERGAR1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGAR1 
Mutations
ICGC Data PortalGAR1 
TCGA Data PortalGAR1 
Broad Tumor PortalGAR1
OASIS PortalGAR1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGAR1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGAR1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GAR1
DgiDB (Drug Gene Interaction Database)GAR1
DoCM (Curated mutations)GAR1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GAR1 (select a term)
intoGenGAR1
Cancer3DGAR1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606468   
Orphanet
MedgenGAR1
Genetic Testing Registry GAR1
NextProtQ9NY12 [Medical]
TSGene54433
GENETestsGAR1
Target ValidationGAR1
Huge Navigator GAR1 [HugePedia]
snp3D : Map Gene to Disease54433
BioCentury BCIQGAR1
ClinGenGAR1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54433
Chemical/Pharm GKB GenePA164720194
Clinical trialGAR1
Miscellaneous
canSAR (ICR)GAR1 (select the gene name)
Probes
Litterature
PubMed40 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGAR1
EVEXGAR1
GoPubMedGAR1
iHOPGAR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:50:18 CEST 2017

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