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GAREM (GRB2 associated, regulator of MAPK1)

Identity

Other aliasC18orf11
FAM59A
Gm944
HGNC (Hugo) GAREM
LocusID (NCBI) 64762
Atlas_Id 63700
Location 18q12.1  [Link to chromosome band 18q12]
Location_base_pair Starts at 29843484 and ends at 30050447 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GAREM   26136
Cards
Entrez_Gene (NCBI)GAREM  64762  GRB2 associated, regulator of MAPK1
AliasesC18orf11; FAM59A; Gm944
GeneCards (Weizmann)GAREM
Ensembl hg19 (Hinxton)ENSG00000141441 [Gene_View]  chr18:29843484-30050447 [Contig_View]  GAREM [Vega]
Ensembl hg38 (Hinxton)ENSG00000141441 [Gene_View]  chr18:29843484-30050447 [Contig_View]  GAREM [Vega]
ICGC DataPortalENSG00000141441
TCGA cBioPortalGAREM
AceView (NCBI)GAREM
Genatlas (Paris)GAREM
WikiGenes64762
SOURCE (Princeton)GAREM
Genetics Home Reference (NIH)GAREM
Genomic and cartography
GoldenPath hg19 (UCSC)GAREM  -     chr18:29843484-30050447 -  18q12.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GAREM  -     18q12.1   [Description]    (hg38-Dec_2013)
EnsemblGAREM - 18q12.1 [CytoView hg19]  GAREM - 18q12.1 [CytoView hg38]
Mapping of homologs : NCBIGAREM [Mapview hg19]  GAREM [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF086529 AI479499 AK025263 AK025660 AK297430
RefSeq transcript (Entrez)NM_001242409 NM_022751
RefSeq genomic (Entrez)NC_000018 NC_018929 NG_030329 NT_010966 NW_004929410
Consensus coding sequences : CCDS (NCBI)GAREM
Cluster EST : UnigeneHs.444314 [ NCBI ]
CGAP (NCI)Hs.444314
Alternative Splicing GalleryENSG00000141441
Gene ExpressionGAREM [ NCBI-GEO ]   GAREM [ EBI - ARRAY_EXPRESS ]   GAREM [ SEEK ]   GAREM [ MEM ]
Gene Expression Viewer (FireBrowse)GAREM [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64762
GTEX Portal (Tissue expression)GAREM
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H706   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H706  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H706
Splice isoforms : SwissVarQ9H706
PhosPhoSitePlusQ9H706
Domains : Interpro (EBI)CABIT_dom    SAM/pointed   
Domain families : Pfam (Sanger)CABIT (PF12736)   
Domain families : Pfam (NCBI)pfam12736   
Conserved Domain (NCBI)GAREM
DMDM Disease mutations64762
Blocks (Seattle)GAREM
PDB (SRS)2DKZ   
PDB (PDBSum)2DKZ   
PDB (IMB)2DKZ   
PDB (RSDB)2DKZ   
Structural Biology KnowledgeBase2DKZ   
SCOP (Structural Classification of Proteins)2DKZ   
CATH (Classification of proteins structures)2DKZ   
SuperfamilyQ9H706
Human Protein AtlasENSG00000141441
Peptide AtlasQ9H706
HPRD12685
IPIIPI00794930   IPI00827957   IPI00171499   
Protein Interaction databases
DIP (DOE-UCLA)Q9H706
IntAct (EBI)Q9H706
FunCoupENSG00000141441
BioGRIDGAREM
STRING (EMBL)GAREM
ZODIACGAREM
Ontologies - Pathways
QuickGOQ9H706
Ontology : AmiGOprotein binding  plasma membrane  epidermal growth factor receptor signaling pathway  positive regulation of cell proliferation  positive regulation of cell division  proline-rich region binding  positive regulation of ERK1 and ERK2 cascade  cellular response to epidermal growth factor stimulus  
Ontology : EGO-EBIprotein binding  plasma membrane  epidermal growth factor receptor signaling pathway  positive regulation of cell proliferation  positive regulation of cell division  proline-rich region binding  positive regulation of ERK1 and ERK2 cascade  cellular response to epidermal growth factor stimulus  
NDEx NetworkGAREM
Atlas of Cancer Signalling NetworkGAREM
Wikipedia pathwaysGAREM
Orthology - Evolution
OrthoDB64762
GeneTree (enSembl)ENSG00000141441
Phylogenetic Trees/Animal Genes : TreeFamGAREM
HOVERGENQ9H706
HOGENOMQ9H706
Homologs : HomoloGeneGAREM
Homology/Alignments : Family Browser (UCSC)GAREM
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGAREM [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GAREM
dbVarGAREM
ClinVarGAREM
1000_GenomesGAREM 
Exome Variant ServerGAREM
ExAC (Exome Aggregation Consortium)GAREM (select the gene name)
Genetic variants : HAPMAP64762
Genomic Variants (DGV)GAREM [DGVbeta]
DECIPHER (Syndromes)18:29843484-30050447  ENSG00000141441
CONAN: Copy Number AnalysisGAREM 
Mutations
ICGC Data PortalGAREM 
TCGA Data PortalGAREM 
Broad Tumor PortalGAREM
OASIS PortalGAREM [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDGAREM
BioMutasearch GAREM
DgiDB (Drug Gene Interaction Database)GAREM
DoCM (Curated mutations)GAREM (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GAREM (select a term)
intoGenGAREM
Cancer3DGAREM(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGAREM
Genetic Testing Registry GAREM
NextProtQ9H706 [Medical]
TSGene64762
GENETestsGAREM
Huge Navigator GAREM [HugePedia]
snp3D : Map Gene to Disease64762
BioCentury BCIQGAREM
ClinGenGAREM
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64762
Chemical/Pharm GKB GenePA134888032
Clinical trialGAREM
Miscellaneous
canSAR (ICR)GAREM (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGAREM
EVEXGAREM
GoPubMedGAREM
iHOPGAREM
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:05:48 CET 2017

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