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GARNL3 (GTPase activating Rap/RanGAP domain like 3)

Identity

Alias_namesGTPase activating RANGAP domain-like 3
GTPase activating Rap/RanGAP domain-like 3
Alias_symbol (synonym)DKFZp761J1523
bA356B19.1
Other alias
HGNC (Hugo) GARNL3
LocusID (NCBI) 84253
Atlas_Id 63702
Location 9q33.3  [Link to chromosome band 9q33]
Location_base_pair Starts at 127263662 and ends at 127393549 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FDXR (17q25.1) / GARNL3 (9q33.3)GARNL3 (9q33.3) / GARNL3 (9q33.3)GPR107 (9q34.11) / GARNL3 (9q33.3)
LRSAM1 (9q33.3) / GARNL3 (9q33.3)SLC2A8 (9q33.3) / GARNL3 (9q33.3)LRSAM1 GARNL3
SLC2A8 GARNL3GPR107 GARNL3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GARNL3   25425
Cards
Entrez_Gene (NCBI)GARNL3  84253  GTPase activating Rap/RanGAP domain like 3
AliasesbA356B19.1
GeneCards (Weizmann)GARNL3
Ensembl hg19 (Hinxton)ENSG00000136895 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000136895 [Gene_View]  chr9:127263662-127393549 [Contig_View]  GARNL3 [Vega]
ICGC DataPortalENSG00000136895
TCGA cBioPortalGARNL3
AceView (NCBI)GARNL3
Genatlas (Paris)GARNL3
WikiGenes84253
SOURCE (Princeton)GARNL3
Genetics Home Reference (NIH)GARNL3
Genomic and cartography
GoldenPath hg38 (UCSC)GARNL3  -     chr9:127263662-127393549 +  9q33.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GARNL3  -     9q33.3   [Description]    (hg19-Feb_2009)
EnsemblGARNL3 - 9q33.3 [CytoView hg19]  GARNL3 - 9q33.3 [CytoView hg38]
Mapping of homologs : NCBIGARNL3 [Mapview hg19]  GARNL3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK025650 AK095679 AK126704 AK293732 AK294970
RefSeq transcript (Entrez)NM_001286779 NM_032293
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GARNL3
Cluster EST : UnigeneHs.736053 [ NCBI ]
CGAP (NCI)Hs.736053
Alternative Splicing GalleryENSG00000136895
Gene ExpressionGARNL3 [ NCBI-GEO ]   GARNL3 [ EBI - ARRAY_EXPRESS ]   GARNL3 [ SEEK ]   GARNL3 [ MEM ]
Gene Expression Viewer (FireBrowse)GARNL3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84253
GTEX Portal (Tissue expression)GARNL3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VVW2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VVW2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VVW2
Splice isoforms : SwissVarQ5VVW2
PhosPhoSitePlusQ5VVW2
Domaine pattern : Prosite (Expaxy)CNH (PS50219)    RAPGAP (PS50085)   
Domains : Interpro (EBI)CNH_dom    Rap_GAP_dom   
Domain families : Pfam (Sanger)CNH (PF00780)    Rap_GAP (PF02145)   
Domain families : Pfam (NCBI)pfam00780    pfam02145   
Domain families : Smart (EMBL)CNH (SM00036)  
Conserved Domain (NCBI)GARNL3
DMDM Disease mutations84253
Blocks (Seattle)GARNL3
SuperfamilyQ5VVW2
Human Protein AtlasENSG00000136895
Peptide AtlasQ5VVW2
HPRD13567
IPIIPI00644502   IPI00844473   IPI00798068   IPI00925743   IPI00552342   IPI00926838   IPI00927210   IPI00927548   IPI00927793   
Protein Interaction databases
DIP (DOE-UCLA)Q5VVW2
IntAct (EBI)Q5VVW2
FunCoupENSG00000136895
BioGRIDGARNL3
STRING (EMBL)GARNL3
ZODIACGARNL3
Ontologies - Pathways
QuickGOQ5VVW2
Ontology : AmiGOGTPase activator activity  positive regulation of GTPase activity  regulation of small GTPase mediated signal transduction  
Ontology : EGO-EBIGTPase activator activity  positive regulation of GTPase activity  regulation of small GTPase mediated signal transduction  
NDEx NetworkGARNL3
Atlas of Cancer Signalling NetworkGARNL3
Wikipedia pathwaysGARNL3
Orthology - Evolution
OrthoDB84253
GeneTree (enSembl)ENSG00000136895
Phylogenetic Trees/Animal Genes : TreeFamGARNL3
HOVERGENQ5VVW2
HOGENOMQ5VVW2
Homologs : HomoloGeneGARNL3
Homology/Alignments : Family Browser (UCSC)GARNL3
Gene fusions - Rearrangements
Fusion: TCGALRSAM1 GARNL3
Fusion: TCGASLC2A8 GARNL3
Fusion: TCGAGPR107 GARNL3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGARNL3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GARNL3
dbVarGARNL3
ClinVarGARNL3
1000_GenomesGARNL3 
Exome Variant ServerGARNL3
ExAC (Exome Aggregation Consortium)GARNL3 (select the gene name)
Genetic variants : HAPMAP84253
Genomic Variants (DGV)GARNL3 [DGVbeta]
DECIPHERGARNL3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGARNL3 
Mutations
ICGC Data PortalGARNL3 
TCGA Data PortalGARNL3 
Broad Tumor PortalGARNL3
OASIS PortalGARNL3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGARNL3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGARNL3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GARNL3
DgiDB (Drug Gene Interaction Database)GARNL3
DoCM (Curated mutations)GARNL3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GARNL3 (select a term)
intoGenGARNL3
Cancer3DGARNL3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGARNL3
Genetic Testing Registry GARNL3
NextProtQ5VVW2 [Medical]
TSGene84253
GENETestsGARNL3
Huge Navigator GARNL3 [HugePedia]
snp3D : Map Gene to Disease84253
BioCentury BCIQGARNL3
ClinGenGARNL3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84253
Chemical/Pharm GKB GenePA134861523
Clinical trialGARNL3
Miscellaneous
canSAR (ICR)GARNL3 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGARNL3
EVEXGARNL3
GoPubMedGARNL3
iHOPGARNL3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:13:21 CEST 2017

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