Atlas of Genetics and Cytogenetics in Oncology and Haematology


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GAS2 (growth arrest specific 2)

Identity

Other alias-
HGNC (Hugo) GAS2
LocusID (NCBI) 2620
Atlas_Id 40685
Location 11p14.3  [Link to chromosome band 11p14]
Location_base_pair Starts at 22666614 and ends at 22813001 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
QSER1 (11p13) / GAS2 (11p14.3)QSER1 11p13 / GAS2 11p14.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GAS2   4167
Cards
Entrez_Gene (NCBI)GAS2  2620  growth arrest specific 2
Aliases
GeneCards (Weizmann)GAS2
Ensembl hg19 (Hinxton)ENSG00000148935 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000148935 [Gene_View]  chr11:22666614-22813001 [Contig_View]  GAS2 [Vega]
ICGC DataPortalENSG00000148935
TCGA cBioPortalGAS2
AceView (NCBI)GAS2
Genatlas (Paris)GAS2
WikiGenes2620
SOURCE (Princeton)GAS2
Genetics Home Reference (NIH)GAS2
Genomic and cartography
GoldenPath hg38 (UCSC)GAS2  -     chr11:22666614-22813001 +  11p14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GAS2  -     11p14.3   [Description]    (hg19-Feb_2009)
EnsemblGAS2 - 11p14.3 [CytoView hg19]  GAS2 - 11p14.3 [CytoView hg38]
Mapping of homologs : NCBIGAS2 [Mapview hg19]  GAS2 [Mapview hg38]
OMIM602835   
Gene and transcription
Genbank (Entrez)AI374985 AK313734 AU099094 BC005077 BC013326
RefSeq transcript (Entrez)NM_001143830 NM_005256 NM_177553
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GAS2
Cluster EST : UnigeneHs.711297 [ NCBI ]
CGAP (NCI)Hs.711297
Alternative Splicing GalleryENSG00000148935
Gene ExpressionGAS2 [ NCBI-GEO ]   GAS2 [ EBI - ARRAY_EXPRESS ]   GAS2 [ SEEK ]   GAS2 [ MEM ]
Gene Expression Viewer (FireBrowse)GAS2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2620
GTEX Portal (Tissue expression)GAS2
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43903   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43903  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43903
Splice isoforms : SwissVarO43903
PhosPhoSitePlusO43903
Domaine pattern : Prosite (Expaxy)CH (PS50021)    GAR (PS51460)   
Domains : Interpro (EBI)CH-domain    GAS2    GAS_dom   
Domain families : Pfam (Sanger)CH (PF00307)    GAS2 (PF02187)   
Domain families : Pfam (NCBI)pfam00307    pfam02187   
Domain families : Smart (EMBL)CH (SM00033)  GAS2 (SM00243)  
Conserved Domain (NCBI)GAS2
DMDM Disease mutations2620
Blocks (Seattle)GAS2
SuperfamilyO43903
Human Protein AtlasENSG00000148935
Peptide AtlasO43903
HPRD04158
IPIIPI00015130   IPI00747369   IPI00978034   IPI00981792   IPI00975946   IPI00978750   IPI00982447   
Protein Interaction databases
DIP (DOE-UCLA)O43903
IntAct (EBI)O43903
FunCoupENSG00000148935
BioGRIDGAS2
STRING (EMBL)GAS2
ZODIACGAS2
Ontologies - Pathways
QuickGOO43903
Ontology : AmiGOcytosol  actin filament  apoptotic process  cell cycle arrest  microtubule binding  regulation of cell shape  membrane  
Ontology : EGO-EBIcytosol  actin filament  apoptotic process  cell cycle arrest  microtubule binding  regulation of cell shape  membrane  
Pathways : BIOCARTAInduction of apoptosis through DR3 and DR4/5 Death Receptors [Genes]   
NDEx NetworkGAS2
Atlas of Cancer Signalling NetworkGAS2
Wikipedia pathwaysGAS2
Orthology - Evolution
OrthoDB2620
GeneTree (enSembl)ENSG00000148935
Phylogenetic Trees/Animal Genes : TreeFamGAS2
HOVERGENO43903
HOGENOMO43903
Homologs : HomoloGeneGAS2
Homology/Alignments : Family Browser (UCSC)GAS2
Gene fusions - Rearrangements
Fusion : MitelmanQSER1/GAS2 [11p13/11p14.3]  [t(11;11)(p13;p14)]  
Fusion: TCGAQSER1 11p13 GAS2 11p14.3 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGAS2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GAS2
dbVarGAS2
ClinVarGAS2
1000_GenomesGAS2 
Exome Variant ServerGAS2
ExAC (Exome Aggregation Consortium)GAS2 (select the gene name)
Genetic variants : HAPMAP2620
Genomic Variants (DGV)GAS2 [DGVbeta]
DECIPHERGAS2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGAS2 
Mutations
ICGC Data PortalGAS2 
TCGA Data PortalGAS2 
Broad Tumor PortalGAS2
OASIS PortalGAS2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGAS2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGAS2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GAS2
DgiDB (Drug Gene Interaction Database)GAS2
DoCM (Curated mutations)GAS2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GAS2 (select a term)
intoGenGAS2
Cancer3DGAS2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602835   
Orphanet
MedgenGAS2
Genetic Testing Registry GAS2
NextProtO43903 [Medical]
TSGene2620
GENETestsGAS2
Target ValidationGAS2
Huge Navigator GAS2 [HugePedia]
snp3D : Map Gene to Disease2620
BioCentury BCIQGAS2
ClinGenGAS2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2620
Chemical/Pharm GKB GenePA28580
Clinical trialGAS2
Miscellaneous
canSAR (ICR)GAS2 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGAS2
EVEXGAS2
GoPubMedGAS2
iHOPGAS2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:01:49 CEST 2017

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