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GAS2L1 (growth arrest-specific 2 like 1)

Identity

Alias_symbol (synonym)GAR22
Other alias
HGNC (Hugo) GAS2L1
LocusID (NCBI) 10634
Atlas_Id 63703
Location 22q12.2  [Link to chromosome band 22q12]
Location_base_pair Starts at 29702985 and ends at 29708778 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
GAS2L1 (22q12.2) / CTD-2547L24.3 ()

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GAS2L1   16955
Cards
Entrez_Gene (NCBI)GAS2L1  10634  growth arrest-specific 2 like 1
AliasesGAR22
GeneCards (Weizmann)GAS2L1
Ensembl hg19 (Hinxton)ENSG00000185340 [Gene_View]  chr22:29702985-29708778 [Contig_View]  GAS2L1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000185340 [Gene_View]  chr22:29702985-29708778 [Contig_View]  GAS2L1 [Vega]
ICGC DataPortalENSG00000185340
TCGA cBioPortalGAS2L1
AceView (NCBI)GAS2L1
Genatlas (Paris)GAS2L1
WikiGenes10634
SOURCE (Princeton)GAS2L1
Genetics Home Reference (NIH)GAS2L1
Genomic and cartography
GoldenPath hg19 (UCSC)GAS2L1  -     chr22:29702985-29708778 +  22q12.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GAS2L1  -     22q12.2   [Description]    (hg38-Dec_2013)
EnsemblGAS2L1 - 22q12.2 [CytoView hg19]  GAS2L1 - 22q12.2 [CytoView hg38]
Mapping of homologs : NCBIGAS2L1 [Mapview hg19]  GAS2L1 [Mapview hg38]
OMIM602128   
Gene and transcription
Genbank (Entrez)AK093386 AK122829 AK223602 AK225484 AK301715
RefSeq transcript (Entrez)NM_001278730 NM_006478 NM_152236 NM_152237
RefSeq genomic (Entrez)NC_000022 NC_018933 NG_032959 NT_011520 NW_004929430
Consensus coding sequences : CCDS (NCBI)GAS2L1
Cluster EST : UnigeneHs.322852 [ NCBI ]
CGAP (NCI)Hs.322852
Alternative Splicing GalleryENSG00000185340
Gene ExpressionGAS2L1 [ NCBI-GEO ]   GAS2L1 [ EBI - ARRAY_EXPRESS ]   GAS2L1 [ SEEK ]   GAS2L1 [ MEM ]
Gene Expression Viewer (FireBrowse)GAS2L1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10634
GTEX Portal (Tissue expression)GAS2L1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99501   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99501  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99501
Splice isoforms : SwissVarQ99501
PhosPhoSitePlusQ99501
Domaine pattern : Prosite (Expaxy)CH (PS50021)    GAR (PS51460)   
Domains : Interpro (EBI)CH-domain    GAS2_dom    GAS2L1   
Domain families : Pfam (Sanger)CH (PF00307)    GAS2 (PF02187)   
Domain families : Pfam (NCBI)pfam00307    pfam02187   
Domain families : Smart (EMBL)CH (SM00033)  GAS2 (SM00243)  
Conserved Domain (NCBI)GAS2L1
DMDM Disease mutations10634
Blocks (Seattle)GAS2L1
SuperfamilyQ99501
Human Protein AtlasENSG00000185340
Peptide AtlasQ99501
HPRD03676
IPIIPI00306170   IPI00376939   IPI00015985   IPI00984979   IPI00978676   IPI00878884   IPI00879427   
Protein Interaction databases
DIP (DOE-UCLA)Q99501
IntAct (EBI)Q99501
FunCoupENSG00000185340
BioGRIDGAS2L1
STRING (EMBL)GAS2L1
ZODIACGAS2L1
Ontologies - Pathways
QuickGOQ99501
Ontology : AmiGOmicrotubule bundle formation  stress fiber  cytoplasm  cytoplasm  cytoskeleton  microtubule  negative regulation of microtubule depolymerization  cell cycle arrest  microtubule binding  cytoskeletal adaptor activity  cytoskeletal adaptor activity  cellular response to starvation  negative regulation of gene expression  negative regulation of cell growth  negative regulation of erythrocyte differentiation  thyroid hormone receptor binding  regulation of cell cycle  cellular response to thyroid hormone stimulus  
Ontology : EGO-EBImicrotubule bundle formation  stress fiber  cytoplasm  cytoplasm  cytoskeleton  microtubule  negative regulation of microtubule depolymerization  cell cycle arrest  microtubule binding  cytoskeletal adaptor activity  cytoskeletal adaptor activity  cellular response to starvation  negative regulation of gene expression  negative regulation of cell growth  negative regulation of erythrocyte differentiation  thyroid hormone receptor binding  regulation of cell cycle  cellular response to thyroid hormone stimulus  
NDEx NetworkGAS2L1
Atlas of Cancer Signalling NetworkGAS2L1
Wikipedia pathwaysGAS2L1
Orthology - Evolution
OrthoDB10634
GeneTree (enSembl)ENSG00000185340
Phylogenetic Trees/Animal Genes : TreeFamGAS2L1
HOVERGENQ99501
HOGENOMQ99501
Homologs : HomoloGeneGAS2L1
Homology/Alignments : Family Browser (UCSC)GAS2L1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGAS2L1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GAS2L1
dbVarGAS2L1
ClinVarGAS2L1
1000_GenomesGAS2L1 
Exome Variant ServerGAS2L1
ExAC (Exome Aggregation Consortium)GAS2L1 (select the gene name)
Genetic variants : HAPMAP10634
Genomic Variants (DGV)GAS2L1 [DGVbeta]
DECIPHER (Syndromes)22:29702985-29708778  ENSG00000185340
CONAN: Copy Number AnalysisGAS2L1 
Mutations
ICGC Data PortalGAS2L1 
TCGA Data PortalGAS2L1 
Broad Tumor PortalGAS2L1
OASIS PortalGAS2L1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGAS2L1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGAS2L1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GAS2L1
DgiDB (Drug Gene Interaction Database)GAS2L1
DoCM (Curated mutations)GAS2L1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GAS2L1 (select a term)
intoGenGAS2L1
Cancer3DGAS2L1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602128   
Orphanet
MedgenGAS2L1
Genetic Testing Registry GAS2L1
NextProtQ99501 [Medical]
TSGene10634
GENETestsGAS2L1
Huge Navigator GAS2L1 [HugePedia]
snp3D : Map Gene to Disease10634
BioCentury BCIQGAS2L1
ClinGenGAS2L1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10634
Chemical/Pharm GKB GenePA38195
Clinical trialGAS2L1
Miscellaneous
canSAR (ICR)GAS2L1 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGAS2L1
EVEXGAS2L1
GoPubMedGAS2L1
iHOPGAS2L1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:05:49 CET 2017

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