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GAS2L2 (growth arrest specific 2 like 2)

Identity

Alias_symbol (synonym)GAR17
Other alias
HGNC (Hugo) GAS2L2
LocusID (NCBI) 246176
Atlas_Id 63705
Location 17q12  [Link to chromosome band 17q12]
Location_base_pair Starts at 35744511 and ends at 35752878 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GAS2L2   24846
Cards
Entrez_Gene (NCBI)GAS2L2  246176  growth arrest specific 2 like 2
AliasesGAR17
GeneCards (Weizmann)GAS2L2
Ensembl hg19 (Hinxton)ENSG00000270765 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000270765 [Gene_View]  chr17:35744511-35752878 [Contig_View]  GAS2L2 [Vega]
ICGC DataPortalENSG00000270765
TCGA cBioPortalGAS2L2
AceView (NCBI)GAS2L2
Genatlas (Paris)GAS2L2
WikiGenes246176
SOURCE (Princeton)GAS2L2
Genetics Home Reference (NIH)GAS2L2
Genomic and cartography
GoldenPath hg38 (UCSC)GAS2L2  -     chr17:35744511-35752878 -  17q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GAS2L2  -     17q12   [Description]    (hg19-Feb_2009)
EnsemblGAS2L2 - 17q12 [CytoView hg19]  GAS2L2 - 17q12 [CytoView hg38]
Mapping of homologs : NCBIGAS2L2 [Mapview hg19]  GAS2L2 [Mapview hg38]
OMIM611398   
Gene and transcription
Genbank (Entrez)AF508784 AF508785 BC148636 CB241159 CB306083
RefSeq transcript (Entrez)NM_139285
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GAS2L2
Cluster EST : UnigeneHs.591194 [ NCBI ]
CGAP (NCI)Hs.591194
Alternative Splicing GalleryENSG00000270765
Gene ExpressionGAS2L2 [ NCBI-GEO ]   GAS2L2 [ EBI - ARRAY_EXPRESS ]   GAS2L2 [ SEEK ]   GAS2L2 [ MEM ]
Gene Expression Viewer (FireBrowse)GAS2L2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)246176
GTEX Portal (Tissue expression)GAS2L2
Human Protein AtlasENSG00000270765-GAS2L2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NHY3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NHY3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NHY3
Splice isoforms : SwissVarQ8NHY3
PhosPhoSitePlusQ8NHY3
Domaine pattern : Prosite (Expaxy)CH (PS50021)    GAR (PS51460)   
Domains : Interpro (EBI)CH-domain    GAS_dom   
Domain families : Pfam (Sanger)CH (PF00307)    GAS2 (PF02187)   
Domain families : Pfam (NCBI)pfam00307    pfam02187   
Domain families : Smart (EMBL)CH (SM00033)  GAS2 (SM00243)  
Conserved Domain (NCBI)GAS2L2
DMDM Disease mutations246176
Blocks (Seattle)GAS2L2
SuperfamilyQ8NHY3
Human Protein Atlas [tissue]ENSG00000270765-GAS2L2 [tissue]
Peptide AtlasQ8NHY3
HPRD11000
IPIIPI00169377   IPI00872449   IPI00386458   
Protein Interaction databases
DIP (DOE-UCLA)Q8NHY3
IntAct (EBI)Q8NHY3
FunCoupENSG00000270765
BioGRIDGAS2L2
STRING (EMBL)GAS2L2
ZODIACGAS2L2
Ontologies - Pathways
QuickGOQ8NHY3
Ontology : AmiGOcytoplasm  cytoskeleton  microtubule binding  
Ontology : EGO-EBIcytoplasm  cytoskeleton  microtubule binding  
NDEx NetworkGAS2L2
Atlas of Cancer Signalling NetworkGAS2L2
Wikipedia pathwaysGAS2L2
Orthology - Evolution
OrthoDB246176
GeneTree (enSembl)ENSG00000270765
Phylogenetic Trees/Animal Genes : TreeFamGAS2L2
HOVERGENQ8NHY3
HOGENOMQ8NHY3
Homologs : HomoloGeneGAS2L2
Homology/Alignments : Family Browser (UCSC)GAS2L2
Gene fusions - Rearrangements
Fusion: Tumor Portal GAS2L2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGAS2L2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GAS2L2
dbVarGAS2L2
ClinVarGAS2L2
1000_GenomesGAS2L2 
Exome Variant ServerGAS2L2
ExAC (Exome Aggregation Consortium)ENSG00000270765
GNOMAD BrowserENSG00000270765
Genetic variants : HAPMAP246176
Genomic Variants (DGV)GAS2L2 [DGVbeta]
DECIPHERGAS2L2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGAS2L2 
Mutations
ICGC Data PortalGAS2L2 
TCGA Data PortalGAS2L2 
Broad Tumor PortalGAS2L2
OASIS PortalGAS2L2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDGAS2L2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GAS2L2
DgiDB (Drug Gene Interaction Database)GAS2L2
DoCM (Curated mutations)GAS2L2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GAS2L2 (select a term)
intoGenGAS2L2
Cancer3DGAS2L2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611398   
Orphanet
MedgenGAS2L2
Genetic Testing Registry GAS2L2
NextProtQ8NHY3 [Medical]
TSGene246176
GENETestsGAS2L2
Target ValidationGAS2L2
Huge Navigator GAS2L2 [HugePedia]
snp3D : Map Gene to Disease246176
BioCentury BCIQGAS2L2
ClinGenGAS2L2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD246176
Chemical/Pharm GKB GenePA134986846
Clinical trialGAS2L2
Miscellaneous
canSAR (ICR)GAS2L2 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGAS2L2
EVEXGAS2L2
GoPubMedGAS2L2
iHOPGAS2L2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:48:45 CET 2017

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