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GAS2L3 (growth arrest specific 2 like 3)

Identity

Other aliasG2L3
HGNC (Hugo) GAS2L3
LocusID (NCBI) 283431
Atlas_Id 63706
Location 12q23.1  [Link to chromosome band 12q23]
Location_base_pair Starts at 100573661 and ends at 100628288 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FAM20B (1q25.2) / GAS2L3 (12q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GAS2L3   27475
Cards
Entrez_Gene (NCBI)GAS2L3  283431  growth arrest specific 2 like 3
AliasesG2L3
GeneCards (Weizmann)GAS2L3
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr12:100573661-100628288 [Contig_View]  GAS2L3 [Vega]
TCGA cBioPortalGAS2L3
AceView (NCBI)GAS2L3
Genatlas (Paris)GAS2L3
WikiGenes283431
SOURCE (Princeton)GAS2L3
Genetics Home Reference (NIH)GAS2L3
Genomic and cartography
GoldenPath hg38 (UCSC)GAS2L3  -     chr12:100573661-100628288 +  12q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GAS2L3  -     12q23.1   [Description]    (hg19-Feb_2009)
EnsemblGAS2L3 - 12q23.1 [CytoView hg19]  GAS2L3 - 12q23.1 [CytoView hg38]
Mapping of homologs : NCBIGAS2L3 [Mapview hg19]  GAS2L3 [Mapview hg38]
OMIM617224   
Gene and transcription
Genbank (Entrez)AA398563 AK095594 AK315189 BC043366 BP872524
RefSeq transcript (Entrez)NM_001303130 NM_001303131 NM_174942
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GAS2L3
Cluster EST : UnigeneHs.547389 [ NCBI ]
CGAP (NCI)Hs.547389
Gene ExpressionGAS2L3 [ NCBI-GEO ]   GAS2L3 [ EBI - ARRAY_EXPRESS ]   GAS2L3 [ SEEK ]   GAS2L3 [ MEM ]
Gene Expression Viewer (FireBrowse)GAS2L3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283431
GTEX Portal (Tissue expression)GAS2L3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86XJ1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86XJ1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86XJ1
Splice isoforms : SwissVarQ86XJ1
PhosPhoSitePlusQ86XJ1
Domaine pattern : Prosite (Expaxy)CH (PS50021)    GAR (PS51460)   
Domains : Interpro (EBI)CH-domain    GAS2L3    GAS_dom   
Domain families : Pfam (Sanger)CH (PF00307)    GAS2 (PF02187)   
Domain families : Pfam (NCBI)pfam00307    pfam02187   
Domain families : Smart (EMBL)CH (SM00033)  GAS2 (SM00243)  
Conserved Domain (NCBI)GAS2L3
DMDM Disease mutations283431
Blocks (Seattle)GAS2L3
SuperfamilyQ86XJ1
Peptide AtlasQ86XJ1
HPRD13568
IPIIPI00185219   IPI01020768   IPI01022899   IPI00794891   
Protein Interaction databases
DIP (DOE-UCLA)Q86XJ1
IntAct (EBI)Q86XJ1
BioGRIDGAS2L3
STRING (EMBL)GAS2L3
ZODIACGAS2L3
Ontologies - Pathways
QuickGOQ86XJ1
Ontology : AmiGOmicrotubule cytoskeleton organization  actin binding  protein binding  cytoplasm  microtubule  microtubule binding  actin cytoskeleton  microtubule cytoskeleton  actin cytoskeleton organization  
Ontology : EGO-EBImicrotubule cytoskeleton organization  actin binding  protein binding  cytoplasm  microtubule  microtubule binding  actin cytoskeleton  microtubule cytoskeleton  actin cytoskeleton organization  
NDEx NetworkGAS2L3
Atlas of Cancer Signalling NetworkGAS2L3
Wikipedia pathwaysGAS2L3
Orthology - Evolution
OrthoDB283431
Phylogenetic Trees/Animal Genes : TreeFamGAS2L3
HOVERGENQ86XJ1
HOGENOMQ86XJ1
Homologs : HomoloGeneGAS2L3
Homology/Alignments : Family Browser (UCSC)GAS2L3
Gene fusions - Rearrangements
Fusion: Tumor Portal GAS2L3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGAS2L3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GAS2L3
dbVarGAS2L3
ClinVarGAS2L3
1000_GenomesGAS2L3 
Exome Variant ServerGAS2L3
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP283431
Genomic Variants (DGV)GAS2L3 [DGVbeta]
DECIPHERGAS2L3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGAS2L3 
Mutations
ICGC Data PortalGAS2L3 
TCGA Data PortalGAS2L3 
Broad Tumor PortalGAS2L3
OASIS PortalGAS2L3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGAS2L3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGAS2L3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GAS2L3
DgiDB (Drug Gene Interaction Database)GAS2L3
DoCM (Curated mutations)GAS2L3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GAS2L3 (select a term)
intoGenGAS2L3
Cancer3DGAS2L3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617224   
Orphanet
MedgenGAS2L3
Genetic Testing Registry GAS2L3
NextProtQ86XJ1 [Medical]
TSGene283431
GENETestsGAS2L3
Target ValidationGAS2L3
Huge Navigator GAS2L3 [HugePedia]
snp3D : Map Gene to Disease283431
BioCentury BCIQGAS2L3
ClinGenGAS2L3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283431
Chemical/Pharm GKB GenePA134979032
Clinical trialGAS2L3
Miscellaneous
canSAR (ICR)GAS2L3 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGAS2L3
EVEXGAS2L3
GoPubMedGAS2L3
iHOPGAS2L3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:48:45 CET 2017

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