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GAS8-AS1 (GAS8 antisense RNA 1)

Identity

Other aliasC16orf3
HGNC (Hugo) GAS8-AS1
LocusID (NCBI) 750
Atlas_Id 57135
Location 16q24.3  [Link to chromosome band 16q24]
Location_base_pair Starts at 90028908 and ends at 90029342 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GAS8-AS1   1197
Cards
Entrez_Gene (NCBI)GAS8-AS1  750  GAS8 antisense RNA 1
AliasesC16orf3
GeneCards (Weizmann)GAS8-AS1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr16:90028908-90029342 [Contig_View]  GAS8-AS1 [Vega]
TCGA cBioPortalGAS8-AS1
AceView (NCBI)GAS8-AS1
Genatlas (Paris)GAS8-AS1
WikiGenes750
SOURCE (Princeton)GAS8-AS1
Genetics Home Reference (NIH)GAS8-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)GAS8-AS1  -     chr16:90028908-90029342 -  16q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GAS8-AS1  -     16q24.3   [Description]    (hg19-Feb_2009)
EnsemblGAS8-AS1 - 16q24.3 [CytoView hg19]  GAS8-AS1 - 16q24.3 [CytoView hg38]
Mapping of homologs : NCBIGAS8-AS1 [Mapview hg19]  GAS8-AS1 [Mapview hg38]
OMIM605179   
Gene and transcription
Genbank (Entrez)AF050080 BC093751 BC104849
RefSeq transcript (Entrez)NM_001214
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GAS8-AS1
Cluster EST : UnigeneHs.633032 [ NCBI ]
CGAP (NCI)Hs.633032
Gene ExpressionGAS8-AS1 [ NCBI-GEO ]   GAS8-AS1 [ EBI - ARRAY_EXPRESS ]   GAS8-AS1 [ SEEK ]   GAS8-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)GAS8-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)750
GTEX Portal (Tissue expression)GAS8-AS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95177   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95177  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95177
Splice isoforms : SwissVarO95177
PhosPhoSitePlusO95177
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)GAS8-AS1
DMDM Disease mutations750
Blocks (Seattle)GAS8-AS1
SuperfamilyO95177
Peptide AtlasO95177
IPIIPI00028902   
Protein Interaction databases
DIP (DOE-UCLA)O95177
IntAct (EBI)O95177
BioGRIDGAS8-AS1
STRING (EMBL)GAS8-AS1
ZODIACGAS8-AS1
Ontologies - Pathways
QuickGOO95177
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkGAS8-AS1
Atlas of Cancer Signalling NetworkGAS8-AS1
Wikipedia pathwaysGAS8-AS1
Orthology - Evolution
OrthoDB750
Phylogenetic Trees/Animal Genes : TreeFamGAS8-AS1
HOVERGENO95177
HOGENOMO95177
Homologs : HomoloGeneGAS8-AS1
Homology/Alignments : Family Browser (UCSC)GAS8-AS1
Gene fusions - Rearrangements
Tumor Fusion PortalGAS8-AS1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGAS8-AS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GAS8-AS1
dbVarGAS8-AS1
ClinVarGAS8-AS1
1000_GenomesGAS8-AS1 
Exome Variant ServerGAS8-AS1
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP750
Genomic Variants (DGV)GAS8-AS1 [DGVbeta]
DECIPHERGAS8-AS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGAS8-AS1 
Mutations
ICGC Data PortalGAS8-AS1 
TCGA Data PortalGAS8-AS1 
Broad Tumor PortalGAS8-AS1
OASIS PortalGAS8-AS1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDGAS8-AS1
BioMutasearch GAS8-AS1
DgiDB (Drug Gene Interaction Database)GAS8-AS1
DoCM (Curated mutations)GAS8-AS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GAS8-AS1 (select a term)
intoGenGAS8-AS1
Cancer3DGAS8-AS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605179   
Orphanet
DisGeNETGAS8-AS1
MedgenGAS8-AS1
Genetic Testing Registry GAS8-AS1
NextProtO95177 [Medical]
TSGene750
GENETestsGAS8-AS1
Target ValidationGAS8-AS1
Huge Navigator GAS8-AS1 [HugePedia]
snp3D : Map Gene to Disease750
BioCentury BCIQGAS8-AS1
ClinGenGAS8-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD750
Chemical/Pharm GKB GenePA25544
Clinical trialGAS8-AS1
Miscellaneous
canSAR (ICR)GAS8-AS1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGAS8-AS1
EVEXGAS8-AS1
GoPubMedGAS8-AS1
iHOPGAS8-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:14:16 CET 2017

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