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GATA5 (GATA binding protein 5)

Identity

Alias_namesGATA-binding protein 5
Alias_symbol (synonym)bB379O24.1
GATAS
Other alias
HGNC (Hugo) GATA5
LocusID (NCBI) 140628
Atlas_Id 43802
Location 20q13.33  [Link to chromosome band 20q13]
Location_base_pair Starts at 61038553 and ends at 61051026 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GATA5   15802
Cards
Entrez_Gene (NCBI)GATA5  140628  GATA binding protein 5
AliasesGATAS; bB379O24.1
GeneCards (Weizmann)GATA5
Ensembl hg19 (Hinxton)ENSG00000130700 [Gene_View]  chr20:61038553-61051026 [Contig_View]  GATA5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000130700 [Gene_View]  chr20:61038553-61051026 [Contig_View]  GATA5 [Vega]
ICGC DataPortalENSG00000130700
TCGA cBioPortalGATA5
AceView (NCBI)GATA5
Genatlas (Paris)GATA5
WikiGenes140628
SOURCE (Princeton)GATA5
Genetics Home Reference (NIH)GATA5
Genomic and cartography
GoldenPath hg19 (UCSC)GATA5  -     chr20:61038553-61051026 -  20q13.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GATA5  -     20q13.33   [Description]    (hg38-Dec_2013)
EnsemblGATA5 - 20q13.33 [CytoView hg19]  GATA5 - 20q13.33 [CytoView hg38]
Mapping of homologs : NCBIGATA5 [Mapview hg19]  GATA5 [Mapview hg38]
OMIM611496   
Gene and transcription
Genbank (Entrez)BC047790 BC117356 BC117358 CA443143
RefSeq transcript (Entrez)NM_080473
RefSeq genomic (Entrez)NC_000020 NC_018931 NT_011362 NW_004929418
Consensus coding sequences : CCDS (NCBI)GATA5
Cluster EST : UnigeneHs.352250 [ NCBI ]
CGAP (NCI)Hs.352250
Alternative Splicing GalleryENSG00000130700
Gene ExpressionGATA5 [ NCBI-GEO ]   GATA5 [ EBI - ARRAY_EXPRESS ]   GATA5 [ SEEK ]   GATA5 [ MEM ]
Gene Expression Viewer (FireBrowse)GATA5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140628
GTEX Portal (Tissue expression)GATA5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BWX5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BWX5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BWX5
Splice isoforms : SwissVarQ9BWX5
PhosPhoSitePlusQ9BWX5
Domaine pattern : Prosite (Expaxy)GATA_ZN_FINGER_1 (PS00344)    GATA_ZN_FINGER_2 (PS50114)   
Domains : Interpro (EBI)GATA_N    TF_GATA-5    TF_GATA_4/5/6    Znf_GATA    Znf_NHR/GATA   
Domain families : Pfam (Sanger)GATA (PF00320)    GATA-N (PF05349)   
Domain families : Pfam (NCBI)pfam00320    pfam05349   
Domain families : Smart (EMBL)ZnF_GATA (SM00401)  
Conserved Domain (NCBI)GATA5
DMDM Disease mutations140628
Blocks (Seattle)GATA5
SuperfamilyQ9BWX5
Human Protein AtlasENSG00000130700
Peptide AtlasQ9BWX5
HPRD17029
IPIIPI00017250   IPI01014273   
Protein Interaction databases
DIP (DOE-UCLA)Q9BWX5
IntAct (EBI)Q9BWX5
FunCoupENSG00000130700
BioGRIDGATA5
STRING (EMBL)GATA5
ZODIACGATA5
Ontologies - Pathways
QuickGOQ9BWX5
Ontology : AmiGORNA polymerase II regulatory region sequence-specific DNA binding  RNA polymerase II transcription factor binding  enhancer sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding  chromatin binding  transcription factor activity, sequence-specific DNA binding  transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding  nucleus  nucleoplasm  transcription factor complex  transcription from RNA polymerase II promoter  heart development  blood coagulation  zinc ion binding  organ morphogenesis  transcription regulatory region DNA binding  cell fate commitment  positive regulation of transcription from RNA polymerase II promoter  cell development  anatomical structure formation involved in morphogenesis  intestinal epithelial cell differentiation  cellular response to BMP stimulus  
Ontology : EGO-EBIRNA polymerase II regulatory region sequence-specific DNA binding  RNA polymerase II transcription factor binding  enhancer sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding  chromatin binding  transcription factor activity, sequence-specific DNA binding  transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding  nucleus  nucleoplasm  transcription factor complex  transcription from RNA polymerase II promoter  heart development  blood coagulation  zinc ion binding  organ morphogenesis  transcription regulatory region DNA binding  cell fate commitment  positive regulation of transcription from RNA polymerase II promoter  cell development  anatomical structure formation involved in morphogenesis  intestinal epithelial cell differentiation  cellular response to BMP stimulus  
NDEx NetworkGATA5
Atlas of Cancer Signalling NetworkGATA5
Wikipedia pathwaysGATA5
Orthology - Evolution
OrthoDB140628
GeneTree (enSembl)ENSG00000130700
Phylogenetic Trees/Animal Genes : TreeFamGATA5
HOVERGENQ9BWX5
HOGENOMQ9BWX5
Homologs : HomoloGeneGATA5
Homology/Alignments : Family Browser (UCSC)GATA5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGATA5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GATA5
dbVarGATA5
ClinVarGATA5
1000_GenomesGATA5 
Exome Variant ServerGATA5
ExAC (Exome Aggregation Consortium)GATA5 (select the gene name)
Genetic variants : HAPMAP140628
Genomic Variants (DGV)GATA5 [DGVbeta]
DECIPHER (Syndromes)20:61038553-61051026  ENSG00000130700
CONAN: Copy Number AnalysisGATA5 
Mutations
ICGC Data PortalGATA5 
TCGA Data PortalGATA5 
Broad Tumor PortalGATA5
OASIS PortalGATA5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGATA5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGATA5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GATA5
DgiDB (Drug Gene Interaction Database)GATA5
DoCM (Curated mutations)GATA5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GATA5 (select a term)
intoGenGATA5
Cancer3DGATA5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611496   
Orphanet820    8592    14114   
MedgenGATA5
Genetic Testing Registry GATA5
NextProtQ9BWX5 [Medical]
TSGene140628
GENETestsGATA5
Huge Navigator GATA5 [HugePedia]
snp3D : Map Gene to Disease140628
BioCentury BCIQGATA5
ClinGenGATA5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD140628
Chemical/Pharm GKB GenePA28588
Clinical trialGATA5
Miscellaneous
canSAR (ICR)GATA5 (select the gene name)
Probes
Litterature
PubMed38 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGATA5
EVEXGATA5
GoPubMedGATA5
iHOPGATA5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 13:07:07 CET 2017

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